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1UFV
Biol. Unit 1
Info
Asym.Unit (105 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (196 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE FROM THERMUS THERMOPHILUS HB8
Authors
:
B. Bagautdinov, S. Kuramitsu, S. Yokoyama, M. Miyano, T. H. Tahirov, Ri Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
10 Jun 03 (Deposition) - 24 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Structural Genomics, Dimer, Domains, Rossmann Fold, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Bagautdinov, S. Kuramitsu, S. Yokoyama, M. Miyano, T. H. Tahirov
Crystal Structure Of Pantothenate Synthetase From Thermus Thermophilus Hb8
To Be Published
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
View:
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
5
Ligand/Ion
GLYCEROL
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:56 , ARG A:117 , HIS A:120 , ARG A:183
BINDING SITE FOR RESIDUE CL A 1001
2
AC2
SOFTWARE
HIS A:29 , SER A:182 , GOL A:1300
BINDING SITE FOR RESIDUE CL A 1002
3
AC3
SOFTWARE
MSE B:25 , GLN B:56 , ARG B:117 , ARG B:183
BINDING SITE FOR RESIDUE CL B 1003
4
AC4
SOFTWARE
PRO A:23 , THR A:24 , MSE A:25 , HIS A:32 , LEU A:35 , CL A:1002 , GOL A:1400 , HOH A:1423 , HOH A:1431 , HOH A:1562
BINDING SITE FOR RESIDUE GOL A 1300
5
AC5
SOFTWARE
GLN A:56 , VAL A:127 , GLN A:149 , GOL A:1300 , HOH A:1401 , HOH A:1567
BINDING SITE FOR RESIDUE GOL A 1400
6
AC6
SOFTWARE
GLN B:56 , VAL B:127 , GLN B:149 , HOH B:1032
BINDING SITE FOR RESIDUE GOL B 500
7
AC7
SOFTWARE
GLU A:61 , ASP A:62 , ARG A:117 , ARG A:183 , ARG A:267 , HOH A:1409
BINDING SITE FOR RESIDUE GOL A 600
8
AC8
SOFTWARE
LEU A:55 , TYR A:94 , ARG A:101 , PRO A:118 , HOH A:1559 , HOH A:1653
BINDING SITE FOR RESIDUE GOL A 700
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ufva_ (A:)
1b: SCOP_d1ufvb_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Thermus thermophilus [TaxId: 274]
(2)
1a
d1ufva_
A:
1b
d1ufvb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ufvA02 (A:174-272)
1b: CATH_1ufvB02 (B:174-272)
2a: CATH_1ufvA01 (A:2-173)
2b: CATH_1ufvB01 (B:2-173)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Thermus thermophilus. Organism_taxid: 274.
(2)
1a
1ufvA02
A:174-272
1b
1ufvB02
B:174-272
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
2a
1ufvA01
A:2-173
2b
1ufvB01
B:2-173
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_1ufvB01 (B:1-274)
1b: PFAM_Pantoate_ligase_1ufvB02 (B:1-274)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Pantoate_ligase-1ufvB01
B:1-274
1b
Pantoate_ligase-1ufvB02
B:1-274
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Asymmetric Unit 1
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