PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1UFQ
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (266 KB)
Biol.Unit 3 (266 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF LIGAND-FREE HUMAN URIDINE-CYTIDINE KINASE 2
Authors
:
N. N. Suzuki, K. Koizumi, M. Fukushima, A. Matsuda, F. Inagaki
Date
:
06 Jun 03 (Deposition) - 04 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (2x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Alpha/Beta Mononucleotide-Binding Hold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. N. Suzuki, K. Koizumi, M. Fukushima, A. Matsuda, F. Inagaki
Structural Basis For The Specificity, Catalysis, And Regulation Of Human Uridine-Cytidine Kinase
Structure V. 12 751 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(7, 28)
Info
All Exons
Exon 1.1a (A:19-33 | B:19-33 | C:19-33 | D:19...)
Exon 1.2 (A:34-87 | B:34-87 (gaps) | C:34-87...)
Exon 1.3 (A:87-119 | B:87-119 | C:87-119 | D...)
Exon 1.6c (A:119-167 | B:119-167 | C:119-167 ...)
Exon 1.8b (A:167-199 | B:167-199 | C:167-199 ...)
Exon 1.10 (A:200-216 | B:200-216 | C:200-216 ...)
Exon 1.11g (A:216-230 | B:216-230 | C:216-230 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.6c
5: Boundary 1.6c/1.8b
6: Boundary 1.8b/1.10
7: Boundary 1.10/1.11g
8: Boundary 1.11g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367879
1a
ENSE00001445845
chr1:
165796768-165797169
402
UCK2_HUMAN
1-33
33
4
A:19-33
B:19-33
C:19-33
D:19-33
15
15
15
15
1.2
ENST00000367879
2
ENSE00001656332
chr1:
165859441-165859600
160
UCK2_HUMAN
34-87
54
4
A:34-87
B:34-87 (gaps)
C:34-87
D:34-87
54
54
54
54
1.3
ENST00000367879
3
ENSE00000958515
chr1:
165860463-165860559
97
UCK2_HUMAN
87-119
33
4
A:87-119
B:87-119
C:87-119
D:87-119
33
33
33
33
1.6c
ENST00000367879
6c
ENSE00001157917
chr1:
165865427-165865569
143
UCK2_HUMAN
119-167
49
4
A:119-167
B:119-167
C:119-167
D:119-167
49
49
49
49
1.8b
ENST00000367879
8b
ENSE00001600798
chr1:
165872419-165872516
98
UCK2_HUMAN
167-199
33
4
A:167-199
B:167-199
C:167-199
D:167-199 (gaps)
33
33
33
33
1.10
ENST00000367879
10
ENSE00001756761
chr1:
165875158-165875206
49
UCK2_HUMAN
200-216
17
4
A:200-216
B:200-216
C:200-216
D:200-216
17
17
17
17
1.11g
ENST00000367879
11g
ENSE00001955918
chr1:
165876921-165877346
426
UCK2_HUMAN
216-261
46
4
A:216-230
B:216-230
C:216-230
D:216-230
15
15
15
15
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ufqa_ (A:)
1b: SCOP_d1ufqb_ (B:)
1c: SCOP_d1ufqc_ (C:)
1d: SCOP_d1ufqd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Phosphoribulokinase/pantothenate kinase
(17)
Protein domain
:
Uridine-cytidine kinase 2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1ufqa_
A:
1b
d1ufqb_
B:
1c
d1ufqc_
C:
1d
d1ufqd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ufqD00 (D:19-230)
1b: CATH_1ufqA00 (A:19-230)
1c: CATH_1ufqC00 (C:19-230)
1d: CATH_1ufqB00 (B:19-230)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1ufqD00
D:19-230
1b
1ufqA00
A:19-230
1c
1ufqC00
C:19-230
1d
1ufqB00
B:19-230
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PRK_1ufqD01 (D:22-217)
1b: PFAM_PRK_1ufqD02 (D:22-217)
1c: PFAM_PRK_1ufqD03 (D:22-217)
1d: PFAM_PRK_1ufqD04 (D:22-217)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
PRK
(16)
Homo sapiens (Human)
(8)
1a
PRK-1ufqD01
D:22-217
1b
PRK-1ufqD02
D:22-217
1c
PRK-1ufqD03
D:22-217
1d
PRK-1ufqD04
D:22-217
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (266 KB)
Header - Biol.Unit 2
Biol.Unit 3 (266 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1UFQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help