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1UET
Biol. Unit 1
Info
Asym.Unit (84 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
DIVERGENT EVOLUTIONS OF TRINUCLEOTIDE POLYMERIZATION REVEALED BY AN ARCHAEAL CCA-ADDING ENZYME STRUCTURE
Authors
:
O. Nureki, Riken Structural Genomics/Proteomics Initiative (Rs
Date
:
21 May 03 (Deposition) - 02 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Transferase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Okabe, K. Tomita, R. Ishitani, R. Ishii, N. Takeuchi, F. Arisaka, O. Nureki, S. Yokoyama
Divergent Evolutions Of Trinucleotide Polymerization Revealed By An Archaeal Cca-Adding Enzyme Structure.
Embo J. V. 22 5918 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:166 , VAL A:167 , ARG A:168 , ASN A:234 , CA A:501 , CA A:504 , HOH A:831
BINDING SITE FOR RESIDUE ACT A 601
2
AC2
SOFTWARE
ACT A:601 , HOH A:631 , HOH A:681 , HOH A:865
BINDING SITE FOR RESIDUE CA A 501
3
AC3
SOFTWARE
GLU A:59 , ASP A:61 , ASP A:110
BINDING SITE FOR RESIDUE MG A 502
4
AC4
SOFTWARE
THR A:383 , GLU A:387 , HOH A:607 , HOH A:657 , HOH A:715 , HOH A:719
BINDING SITE FOR RESIDUE CA A 503
5
AC5
SOFTWARE
LYS A:166 , ACT A:601 , HOH A:785 , HOH A:821
BINDING SITE FOR RESIDUE CA A 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1ueta1 (A:143-257)
2a: SCOP_d1ueta3 (A:258-437)
3a: SCOP_d1ueta2 (A:2-142)
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Class
:
All alpha proteins
(14657)
Fold
:
PAP/OAS1 substrate-binding domain
(46)
Superfamily
:
PAP/OAS1 substrate-binding domain
(46)
Family
:
Archaeal tRNA CCA-adding enzyme substrate-binding domain
(26)
Protein domain
:
tRNA nucleotidyltransferase, second domain
(26)
Archaeoglobus fulgidus [TaxId: 2234]
(26)
1a
d1ueta1
A:143-257
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
PAP/Archaeal CCA-adding enzyme, C-terminal domain
(37)
Family
:
Archaeal tRNA CCA-adding enzyme
(28)
Protein domain
:
tRNA nucleotidyltransferase, C-terminal domain
(26)
Archaeoglobus fulgidus [TaxId: 2234]
(26)
2a
d1ueta3
A:258-437
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Archaeal tRNA CCA-adding enzyme catalytic domain
(26)
Protein domain
:
tRNA nucleotidyltransferase, N-terminal domain
(26)
Archaeoglobus fulgidus [TaxId: 2234]
(26)
3a
d1ueta2
A:2-142
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_NTP_transf_2_1uetA01 (A:25-133)
2a: PFAM_tRNA_NucTransf2_1uetA02 (A:146-256)
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Clan
:
NTP_transf
(45)
Family
:
NTP_transf_2
(35)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(22)
1a
NTP_transf_2-1uetA01
A:25-133
Clan
:
no clan defined [family: tRNA_NucTransf2]
(21)
Family
:
tRNA_NucTransf2
(21)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(21)
2a
tRNA_NucTransf2-1uetA02
A:146-256
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Chain A
Asymmetric Unit 1
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Asym.Unit (84 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (157 KB)
Header - Biol.Unit 2
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