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1UDA
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
Authors
:
J. B. Thoden, H. M. Holden
Date
:
06 Jan 97 (Deposition) - 14 Jan 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Udp-Galactose, Epimerase, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. B. Thoden, A. D. Hegeman, G. Wesenberg, M. C. Chapeau, P. A. Frey, H. M. Holden
Structural Analysis Of Udp-Sugar Binding To Udp-Galactose 4-Epimerase From Escherichia Coli.
Biochemistry V. 36 6294 1997
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
NA
3
Ligand/Ion
SODIUM ION
3
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
UFG
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:91 , HOH A:505 , HOH A:647 , HOH A:715 , HOH A:956 , HOH A:964
BINDING SITE FOR RESIDUE NA A 420
2
AC2
SOFTWARE
GLN A:194 , HOH A:551 , HOH A:898 , HOH A:959 , HOH A:986
BINDING SITE FOR RESIDUE NA A 421
3
AC3
SOFTWARE
GLN A:334 , HOH A:624 , HOH A:799 , HOH A:864 , HOH A:916 , HOH A:948
BINDING SITE FOR RESIDUE NA A 422
4
AC4
SOFTWARE
GLY A:7 , GLY A:10 , TYR A:11 , ILE A:12 , ASP A:31 , ASN A:32 , LEU A:33 , CYS A:34 , ASN A:35 , SER A:36 , GLY A:57 , ASP A:58 , ILE A:59 , PHE A:80 , ALA A:81 , GLY A:82 , LYS A:84 , ASN A:99 , SER A:122 , SER A:123 , TYR A:149 , LYS A:153 , TYR A:177 , PRO A:180 , EDO A:411 , HOH A:509 , HOH A:511 , HOH A:512 , HOH A:521 , HOH A:529 , HOH A:588 , HOH A:592
BINDING SITE FOR RESIDUE NAD A 340
5
AC5
SOFTWARE
VAL A:86 , SER A:124 , THR A:126 , TYR A:149 , PHE A:178 , ASN A:179 , ASN A:198 , ASN A:199 , LEU A:200 , ALA A:216 , ILE A:217 , PHE A:218 , GLY A:229 , ARG A:231 , TYR A:233 , ARG A:292 , ASP A:295 , TYR A:299 , HOH A:522 , HOH A:547 , HOH A:560 , HOH A:574 , HOH A:661 , HOH A:776 , HOH A:866 , HOH A:942 , HOH A:955
BINDING SITE FOR RESIDUE UFG A 341
6
AC6
SOFTWARE
LEU A:250 , LYS A:253 , GLU A:309
BINDING SITE FOR RESIDUE PGE A 410
7
AC7
SOFTWARE
TYR A:11 , ASN A:35 , GLU A:191 , ASP A:192 , NAD A:340 , HOH A:651 , HOH A:750
BINDING SITE FOR RESIDUE EDO A 411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1udaa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
(26)
Escherichia coli [TaxId: 562]
(17)
1a
d1udaa_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1udaA02 (A:1-181,A:232-262)
2a: CATH_1udaA01 (A:182-231,A:263-338)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562
(11)
1a
1udaA02
A:1-181,A:232-262
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Escherichia coli. Organism_taxid: 562
(3)
2a
1udaA01
A:182-231,A:263-338
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Epimerase_1udaA01 (A:3-262)
2a: PFAM_Epimerase_Csub_1udaA02 (A:275-336)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Epimerase
(42)
Escherichia coli (strain K12)
(19)
1a
Epimerase-1udaA01
A:3-262
Clan
:
no clan defined [family: Epimerase_Csub]
(12)
Family
:
Epimerase_Csub
(12)
Escherichia coli (strain K12)
(12)
2a
Epimerase_Csub-1udaA02
A:275-336
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Asymmetric Unit 1
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