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1UD9
Biol. Unit 5
Info
Asym.Unit (169 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM SULFOLOBUS TOKODAII
Authors
:
E. Tanabe, Y. Yasutake, Y. Tanaka, M. Yao, K. Tsumoto, I. Kumagai, I. Tan
Date
:
28 Apr 03 (Deposition) - 15 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Dna-Binding, Dna Replication, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Tanabe, Y. Yasutake, Y. Tanaka, M. Yao, K. Tsumoto, I. Kumagai, I. Tanaka
Crystal Structure Of Proliferating Cell Nuclear Antigen (Pcna) Homolog From Sulfolobus Tokodaii
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
View:
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Sorry, no Info available
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:1 , ZN A:502 , HOH A:1413 , HOH A:1414
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:90 , ASP A:92 , ZN A:501 , HOH A:1414
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
GLU A:167 , SER A:245 , HOH A:1415
BINDING SITE FOR RESIDUE ZN A 503
04
AC4
SOFTWARE
GLU A:159 , HOH A:1437 , GLU D:58 , ZN D:504
BINDING SITE FOR RESIDUE ZN A 505
05
AC5
SOFTWARE
GLU A:191 , HOH A:1417 , GLU D:86
BINDING SITE FOR RESIDUE ZN A 506
06
AC6
SOFTWARE
HIS A:2 , GLU A:58 , HOH A:1136
BINDING SITE FOR RESIDUE ZN A 512
07
AC7
SOFTWARE
ASP A:203 , HOH A:1255
BINDING SITE FOR RESIDUE ZN A 515
08
AC8
SOFTWARE
ASP A:197 , GLU A:199
BINDING SITE FOR RESIDUE ZN A 516
09
AC9
SOFTWARE
HIS B:2 , GLU B:58 , ALA C:1 , HOH C:1421
BINDING SITE FOR RESIDUE ZN B 508
10
BC1
SOFTWARE
ASP B:90 , ASP B:92 , ASP C:90
BINDING SITE FOR RESIDUE ZN B 510
11
BC2
SOFTWARE
GLU B:231 , HOH B:1238 , HOH B:1434 , HOH B:1444
BINDING SITE FOR RESIDUE ZN B 522
12
BC3
SOFTWARE
ASP B:151 , ASP B:197 , GLU B:199
BINDING SITE FOR RESIDUE ZN B 523
13
BC4
SOFTWARE
HOH B:1441 , HIS C:2 , VAL C:4 , GLU C:58 , HOH C:1440
BINDING SITE FOR RESIDUE ZN C 509
14
BC5
SOFTWARE
HIS B:43 , GLU C:167 , SER C:245 , HOH C:1422
BINDING SITE FOR RESIDUE ZN C 511
15
BC6
SOFTWARE
GLU B:167 , SER B:245 , HIS C:43
BINDING SITE FOR RESIDUE ZN C 513
16
BC7
SOFTWARE
ASP C:203
BINDING SITE FOR RESIDUE ZN C 520
17
BC8
SOFTWARE
GLU C:231 , HOH C:1263 , HOH C:1432 , HOH C:1433
BINDING SITE FOR RESIDUE ZN C 521
18
BC9
SOFTWARE
GLU A:159 , ZN A:505 , HOH A:1437 , HIS D:2 , GLU D:58 , HOH D:1436
BINDING SITE FOR RESIDUE ZN D 504
19
CC2
SOFTWARE
ASP C:179 , HOH C:1239 , ASN D:135 , SER D:137 , HOH D:1067
BINDING SITE FOR RESIDUE ZN D 514
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:33-56,B:33-56,C:33-56)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA1_SULTO
33-56
3
A:33-56
B:33-56
C:33-56
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ud9a1 (A:1-119)
1b: SCOP_d1ud9a2 (A:127-245)
1c: SCOP_d1ud9b1 (B:1-119)
1d: SCOP_d1ud9b2 (B:127-245)
1e: SCOP_d1ud9c1 (C:1-119)
1f: SCOP_d1ud9c2 (C:127-245)
1g: SCOP_d1ud9d1 (D:1-119)
1h: SCOP_d1ud9d2 (D:127-245)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Sulfolobus tokodaii [TaxId: 111955]
(1)
1a
d1ud9a1
A:1-119
1b
d1ud9a2
A:127-245
1c
d1ud9b1
B:1-119
1d
d1ud9b2
B:127-245
1e
d1ud9c1
C:1-119
1f
d1ud9c2
C:127-245
1g
d1ud9d1
D:1-119
1h
d1ud9d2
D:127-245
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ud9A00 (A:1-245)
1b: CATH_1ud9D00 (D:1-245)
1c: CATH_1ud9C00 (C:1-245)
1d: CATH_1ud9B00 (B:1-245)
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Sulfolobus tokodaii. Organism_taxid: 111955.
(1)
1a
1ud9A00
A:1-245
1b
1ud9D00
D:1-245
1c
1ud9C00
C:1-245
1d
1ud9B00
B:1-245
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (44 KB)
Header - Biol.Unit 4
Biol.Unit 5 (123 KB)
Header - Biol.Unit 5
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