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1UD9
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM SULFOLOBUS TOKODAII
Authors
:
E. Tanabe, Y. Yasutake, Y. Tanaka, M. Yao, K. Tsumoto, I. Kumagai, I. Tan
Date
:
28 Apr 03 (Deposition) - 15 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Dna-Binding, Dna Replication, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Tanabe, Y. Yasutake, Y. Tanaka, M. Yao, K. Tsumoto, I. Kumagai, I. Tanaka
Crystal Structure Of Proliferating Cell Nuclear Antigen (Pcna) Homolog From Sulfolobus Tokodaii
To Be Published
[
close entry info
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Hetero Components
(1, 23)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
23
Ligand/Ion
ZINC ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:1 , ZN A:502 , HOH A:1413 , HOH A:1414
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:90 , ASP A:92 , ZN A:501 , HOH A:1414
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
GLU A:167 , SER A:245 , HOH A:1415
BINDING SITE FOR RESIDUE ZN A 503
04
AC4
SOFTWARE
GLU A:159 , HOH A:1437 , GLU D:58 , ZN D:504
BINDING SITE FOR RESIDUE ZN A 505
05
AC5
SOFTWARE
GLU A:191 , HOH A:1417 , GLU D:86
BINDING SITE FOR RESIDUE ZN A 506
06
AC6
SOFTWARE
HIS A:2 , GLU A:58 , HOH A:1136
BINDING SITE FOR RESIDUE ZN A 512
07
AC7
SOFTWARE
ASP A:203 , HOH A:1255
BINDING SITE FOR RESIDUE ZN A 515
08
AC8
SOFTWARE
ASP A:197 , GLU A:199
BINDING SITE FOR RESIDUE ZN A 516
09
AC9
SOFTWARE
HIS B:2 , GLU B:58 , ALA C:1 , HOH C:1421
BINDING SITE FOR RESIDUE ZN B 508
10
BC1
SOFTWARE
ASP B:90 , ASP B:92 , ASP C:90
BINDING SITE FOR RESIDUE ZN B 510
11
BC2
SOFTWARE
GLU B:231 , HOH B:1238 , HOH B:1434 , HOH B:1444
BINDING SITE FOR RESIDUE ZN B 522
12
BC3
SOFTWARE
ASP B:151 , ASP B:197 , GLU B:199
BINDING SITE FOR RESIDUE ZN B 523
13
BC4
SOFTWARE
HOH B:1441 , HIS C:2 , VAL C:4 , GLU C:58 , HOH C:1440
BINDING SITE FOR RESIDUE ZN C 509
14
BC5
SOFTWARE
HIS B:43 , GLU C:167 , SER C:245 , HOH C:1422
BINDING SITE FOR RESIDUE ZN C 511
15
BC6
SOFTWARE
GLU B:167 , SER B:245 , HIS C:43
BINDING SITE FOR RESIDUE ZN C 513
16
BC7
SOFTWARE
ASP C:203
BINDING SITE FOR RESIDUE ZN C 520
17
BC8
SOFTWARE
GLU C:231 , HOH C:1263 , HOH C:1432 , HOH C:1433
BINDING SITE FOR RESIDUE ZN C 521
18
BC9
SOFTWARE
GLU A:159 , ZN A:505 , HOH A:1437 , HIS D:2 , GLU D:58 , HOH D:1436
BINDING SITE FOR RESIDUE ZN D 504
19
CC1
SOFTWARE
GLU D:167 , SER D:245 , HOH D:1419
BINDING SITE FOR RESIDUE ZN D 507
20
CC2
SOFTWARE
ASP C:179 , HOH C:1239 , ASN D:135 , SER D:137 , HOH D:1067
BINDING SITE FOR RESIDUE ZN D 514
21
CC3
SOFTWARE
GLU D:231 , HOH D:1213
BINDING SITE FOR RESIDUE ZN D 517
22
CC4
SOFTWARE
ASN D:189 , HOH D:1425 , HOH D:1426 , HOH D:1427
BINDING SITE FOR RESIDUE ZN D 518
23
CC5
SOFTWARE
GLU D:199 , ASP D:203 , HOH D:1241 , HOH D:1309
BINDING SITE FOR RESIDUE ZN D 519
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:33-56,B:33-56,C:33-56,D:33-56)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA1_SULTO
33-56
4
A:33-56
B:33-56
C:33-56
D:33-56
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ud9a1 (A:1-119)
1b: SCOP_d1ud9a2 (A:127-245)
1c: SCOP_d1ud9b1 (B:1-119)
1d: SCOP_d1ud9b2 (B:127-245)
1e: SCOP_d1ud9c1 (C:1-119)
1f: SCOP_d1ud9c2 (C:127-245)
1g: SCOP_d1ud9d1 (D:1-119)
1h: SCOP_d1ud9d2 (D:127-245)
View:
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Classes
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Sulfolobus tokodaii [TaxId: 111955]
(1)
1a
d1ud9a1
A:1-119
1b
d1ud9a2
A:127-245
1c
d1ud9b1
B:1-119
1d
d1ud9b2
B:127-245
1e
d1ud9c1
C:1-119
1f
d1ud9c2
C:127-245
1g
d1ud9d1
D:1-119
1h
d1ud9d2
D:127-245
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ud9A00 (A:1-245)
1b: CATH_1ud9D00 (D:1-245)
1c: CATH_1ud9C00 (C:1-245)
1d: CATH_1ud9B00 (B:1-245)
View:
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Classes
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)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Sulfolobus tokodaii. Organism_taxid: 111955.
(1)
1a
1ud9A00
A:1-245
1b
1ud9D00
D:1-245
1c
1ud9C00
C:1-245
1d
1ud9B00
B:1-245
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (169 KB)
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