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1UB7
Biol. Unit 2
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Asym.Unit (212 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
THE CRYSTAL ANALYSIS OF BETA-KEROACYL-[ACYL CARRIER PROTEIN] SYNTHASE III (FABH)FROM THERMUS THERMOPHILUS.
Authors
:
E. Inagaki, M. Miyano, T. H. Tahirov, Riken Structural Genomics/Pro Initiative (Rsgi)
Date
:
31 Mar 03 (Deposition) - 15 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fatty Acid Synthesis, Beta-Ketoacyl-Acp Synthase Iii, Fabh, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transferase
(Keyword Search:
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Reference
:
E. Inagaki, S. Kuramitsu, S. Yokoyama, M. Miyano, T. H. Tahirov
The Crystal Structure Of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase Iii (Fabh) From Thermus Thermophilus
To Be Published
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
1c: S-HYDROXYCYSTEINE (CSOc)
1d: S-HYDROXYCYSTEINE (CSOd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
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No.
Name
Count
Type
Full Name
1
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
GOL
7
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
VAL C:177 , LEU C:178 , LEU D:128
BINDING SITE FOR RESIDUE GOL C 403
2
AC4
SOFTWARE
LEU C:128 , VAL D:177 , LEU D:178 , LYS D:232 , HOH D:438 , HOH D:495
BINDING SITE FOR RESIDUE GOL D 404
3
AC5
SOFTWARE
TYR D:274 , LEU D:284 , LYS D:287 , GLU D:288 , GOL D:409 , HOH D:444
BINDING SITE FOR RESIDUE GOL D 405
4
AC6
SOFTWARE
ARG A:241 , ARG D:296 , GLU D:297
BINDING SITE FOR RESIDUE GOL D 406
5
AC7
SOFTWARE
HIS C:121 , ARG C:174 , HOH C:430 , HOH C:450 , LEU D:128
BINDING SITE FOR RESIDUE GOL C 407
6
AC8
SOFTWARE
GLU C:238 , ILE C:240 , ARG C:241 , ARG C:266
BINDING SITE FOR RESIDUE GOL C 408
7
AC9
SOFTWARE
ARG D:42 , GOL D:405
BINDING SITE FOR RESIDUE GOL D 409
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ub7a1 (A:2-173)
1b: SCOP_d1ub7a2 (A:174-322)
1c: SCOP_d1ub7b1 (B:2-173)
1d: SCOP_d1ub7b2 (B:174-322)
1e: SCOP_d1ub7c1 (C:2-173)
1f: SCOP_d1ub7c2 (C:174-322)
1g: SCOP_d1ub7d1 (D:2-173)
1h: SCOP_d1ub7d2 (D:174-322)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Chalcone synthase-like
(56)
Protein domain
:
Ketoacyl-ACP synthase III (FabH)
(22)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1ub7a1
A:2-173
1b
d1ub7a2
A:174-322
1c
d1ub7b1
B:2-173
1d
d1ub7b2
B:174-322
1e
d1ub7c1
C:2-173
1f
d1ub7c2
C:174-322
1g
d1ub7d1
D:2-173
1h
d1ub7d2
D:174-322
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ub7A01 (A:2-171)
1b: CATH_1ub7B01 (B:2-171)
1c: CATH_1ub7C01 (C:2-171)
1d: CATH_1ub7D01 (D:2-171)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
1a
1ub7A01
A:2-171
1b
1ub7B01
B:2-171
1c
1ub7C01
C:2-171
1d
1ub7D01
D:2-171
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ACP_syn_III_1ub7D01 (D:104-182)
1b: PFAM_ACP_syn_III_1ub7D02 (D:104-182)
1c: PFAM_ACP_syn_III_1ub7D03 (D:104-182)
1d: PFAM_ACP_syn_III_1ub7D04 (D:104-182)
2a: PFAM_ACP_syn_III_C_1ub7D05 (D:230-319)
2b: PFAM_ACP_syn_III_C_1ub7D06 (D:230-319)
2c: PFAM_ACP_syn_III_C_1ub7D07 (D:230-319)
2d: PFAM_ACP_syn_III_C_1ub7D08 (D:230-319)
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Clan
:
Thiolase
(72)
Family
:
ACP_syn_III
(12)
Thermus thermophilus
(1)
1a
ACP_syn_III-1ub7D01
D:104-182
1b
ACP_syn_III-1ub7D02
D:104-182
1c
ACP_syn_III-1ub7D03
D:104-182
1d
ACP_syn_III-1ub7D04
D:104-182
Family
:
ACP_syn_III_C
(12)
Thermus thermophilus
(1)
2a
ACP_syn_III_C-1ub7D05
D:230-319
2b
ACP_syn_III_C-1ub7D06
D:230-319
2c
ACP_syn_III_C-1ub7D07
D:230-319
2d
ACP_syn_III_C-1ub7D08
D:230-319
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Asymmetric Unit 1
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Asym.Unit (212 KB)
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Header - Biol.Unit 1
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