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1UB2
Biol. Unit 1
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Asym.Unit (134 KB)
Biol.Unit 1 (253 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CATALASE-PEROXIDASE FROM SYNECHOCOCCUS PCC 7942
Authors
:
K. Wada, T. Tada
Date
:
28 Mar 03 (Deposition) - 28 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Catalase-Peroxidase, Catalase, Peroxidase, Katg, Synechococcus Pcc 7942, Cyanobacteria, Oxidoreductase
(Keyword Search:
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Reference
:
K. Wada, T. Tada
Crystal Structure Of Catalase-Peroxidase From Synechococcus Pcc 7942
To Be Published
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Hetero Components
(1, 2)
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All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
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Name
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Type
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1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
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Description
1
AC1
SOFTWARE
GLY A:86 , LEU A:87 , ILE A:89 , ARG A:90 , TRP A:93 , PRO A:224 , LEU A:257 , THR A:258 , GLY A:261 , HIS A:262 , GLY A:265 , LYS A:266 , CYS A:267 , HIS A:268 , THR A:306 , SER A:307 , TRP A:313 , ALA A:374 , PHE A:402 , TRP A:406 , HOH A:742 , HOH A:743 , HOH A:769
BINDING SITE FOR RESIDUE HEM A 721
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: PEROXIDASE_2 (A:85-96)
2: PEROXIDASE_4 (A:455-720)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
KATG_SYNE7
86-97
2
A:85-96
2
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
KATG_SYNE7
455-720
2
A:455-720
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ub2a1 (A:21-426)
1b: SCOP_d1ub2a2 (A:427-720)
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Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Catalase-peroxidase KatG
(26)
Protein domain
:
Catalase-peroxidase KatG
(23)
Synechococcus elongatus PCC 7942 [TaxId: 1140]
(1)
1a
d1ub2a1
A:21-426
1b
d1ub2a2
A:427-720
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1ub2A03 (A:429-573,A:696-720)
1b: CATH_1ub2A01 (A:21-185,A:394-428)
2a: CATH_1ub2A04 (A:574-695)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Synechococcus elongatus pcc 7942. Organism_taxid: 1140. Strain: pcc 7942.
(1)
1a
1ub2A03
A:429-573,A:696-720
1b
1ub2A01
A:21-185,A:394-428
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Synechococcus elongatus pcc 7942. Organism_taxid: 1140. Strain: pcc 7942.
(1)
2a
1ub2A04
A:574-695
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_peroxidase_1ub2A01 (A:399-694)
1b: PFAM_peroxidase_1ub2A02 (A:399-694)
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Clan
:
no clan defined [family: peroxidase]
(92)
Family
:
peroxidase
(92)
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
(1)
1a
peroxidase-1ub2A01
A:399-694
1b
peroxidase-1ub2A02
A:399-694
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Asym.Unit (134 KB)
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