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1U8X
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLVA FROM BACILLUS SUBTILIS, A METAL-REQUIRING, NAD-DEPENDENT 6-PHOSPHO-ALPHA-GLUCOSIDASE
Authors
:
S. S. Rajan, X. Yang, F. Collart, W. F. Anderson, Midwest Center For S Genomics (Mcsg)
Date
:
09 Aug 04 (Deposition) - 24 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Structural Genomics, Psi, Protein Structure Initiative, Mcsg, Glucosidase, Nad-Dependent, Midwest Center For Structural Genomics, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. S. Rajan, X. Yang, F. Collart, V. L. Yip, S. G. Withers, A. Varrot, J. Thompson, G. J. Davies, W. F. Anderson
Novel Catalytic Mechanism Of Glycoside Hydrolysis Based On The Structure Of An Nad(+)/Mn(2+)-Dependent Phospho-Alpha-Glucosidase From Bacillus Subtilis.
Structure V. 12 1619 2004
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pa)
2a: MANGANESE (II) ION (MNa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
View:
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No.
Name
Count
Type
Full Name
1
G6P
1
Ligand/Ion
ALPHA-D-GLUCOSE-6-PHOSPHATE
2
MN
1
Ligand/Ion
MANGANESE (II) ION
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG X:95 , GLU X:111 , ASN X:149 , CYS X:171 , ASP X:172 , MSE X:173 , HIS X:202 , TYR X:265 , ARG X:285 , ARG X:293 , MN X:700 , NAD X:900 , HOH X:1053
BINDING SITE FOR RESIDUE G6P X 902
2
AC2
SOFTWARE
CYS X:171 , HIS X:202 , NAD X:900 , G6P X:902 , HOH X:1053
BINDING SITE FOR RESIDUE MN X 700
3
AC3
SOFTWARE
GLY X:12 , GLY X:14 , SER X:15 , THR X:16 , PHE X:17 , ASP X:41 , ASN X:42 , ASP X:43 , HIS X:86 , ILE X:87 , ARG X:88 , TYR X:92 , GLU X:111 , TYR X:120 , TYR X:147 , ASN X:149 , ILE X:170 , CYS X:171 , ASP X:172 , ARG X:293 , MN X:700 , G6P X:902 , HOH X:1034 , HOH X:1053 , HOH X:1056 , HOH X:1058
BINDING SITE FOR RESIDUE NAD X 900
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F4 (X:140-171)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F4
PS01324
Glycosyl hydrolases family 4 signature.
GLVA_BACSU
140-171
1
X:140-171
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1u8xx2 (X:170-445)
2a: SCOP_d1u8xx1 (X:3-169)
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Families
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
AglA-like glucosidase
(9)
Protein domain
:
Maltose-6'-phosphate glucosidase GlvA
(1)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1u8xx2
X:170-445
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Maltose-6'-phosphate glucosidase GlvA
(1)
Bacillus subtilis [TaxId: 1423]
(1)
2a
d1u8xx1
X:3-169
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1u8xX01 (X:3-168)
2a: CATH_1u8xX02 (X:169-445)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Bacillus subtilis. Organism_taxid: 1423.
(9)
1a
1u8xX01
X:3-168
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Bacillus subtilis. Organism_taxid: 1423.
(1)
2a
1u8xX02
X:169-445
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_4C_1u8xX01 (X:191-417)
2a: PFAM_Glyco_hydro_4_1u8xX02 (X:7-187)
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Clan
:
LDH_C
(56)
Family
:
Glyco_hydro_4C
(5)
Bacillus subtilis
(1)
1a
Glyco_hydro_4C-1u8xX01
X:191-417
Clan
:
NADP_Rossmann
(1239)
Family
:
Glyco_hydro_4
(5)
Bacillus subtilis
(1)
2a
Glyco_hydro_4-1u8xX02
X:7-187
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