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1U7P
Asym. Unit
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Asym.Unit (118 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (31 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE HYPOTHETICAL PHOSPHOTYROSINE PHOSPHATASE MDP-1 OF THE HALOACID DEHALOGENASE SUPERFAMILY
Authors
:
E. Peisach, J. D. Selengut, D. Dunaway-Mariano, K. N. Allen
Date
:
04 Aug 04 (Deposition) - 19 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Had Superfamily, Phosphoryl Transfer, Phosphotyrosine Phosphatase, Aspartate Nucleophile, Enzyme Evolution, Structural Enzymology, Class Iii, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Peisach, J. D. Selengut, D. Dunaway-Mariano, K. N. Allen
X-Ray Crystal Structure Of The Hypothetical Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid Dehalogenase Superfamily
Biochemistry V. 43 12770 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: TUNGSTATE(VI)ION (WO4a)
2b: TUNGSTATE(VI)ION (WO4b)
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No.
Name
Count
Type
Full Name
1
MG
4
Ligand/Ion
MAGNESIUM ION
2
WO4
2
Ligand/Ion
TUNGSTATE(VI)ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:11 , ASP A:13 , ASP A:123 , WO4 A:505 , HOH A:533 , HOH A:564
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
ASP B:11 , ASP B:13 , THR B:15 , ASP B:122 , ASP B:123 , HOH B:597
BINDING SITE FOR RESIDUE MG B 502
3
AC3
SOFTWARE
ASP C:11 , ASP C:13 , ASP C:123 , WO4 C:506 , HOH C:550 , HOH C:584
BINDING SITE FOR RESIDUE MG C 503
4
AC4
SOFTWARE
ASP D:11 , ASP D:13 , ASP D:122 , ASP D:123 , HOH D:562
BINDING SITE FOR RESIDUE MG D 504
5
AC5
SOFTWARE
ASP A:11 , LEU A:12 , ASP A:13 , SER A:69 , ARG A:70 , THR A:71 , LYS A:100 , MG A:501 , HOH A:571
BINDING SITE FOR RESIDUE WO4 A 505
6
AC6
SOFTWARE
ASP C:11 , LEU C:12 , ASP C:13 , SER C:69 , ARG C:70 , THR C:71 , LYS C:100 , MG C:503 , HOH C:560
BINDING SITE FOR RESIDUE WO4 C 506
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u7pa_ (A:)
1b: SCOP_d1u7pb_ (B:)
1c: SCOP_d1u7pc_ (C:)
1d: SCOP_d1u7pd_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Magnesium-dependent phosphatase-1, Mdp1
(3)
Protein domain
:
Magnesium-dependent phosphatase-1, Mdp1
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d1u7pa_
A:
1b
d1u7pb_
B:
1c
d1u7pc_
C:
1d
d1u7pd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u7pD00 (D:2-162)
1b: CATH_1u7pB00 (B:2-163)
1c: CATH_1u7pC00 (C:2-164)
1d: CATH_1u7pA00 (A:1-164)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
House mouse (Mus musculus)
(7)
1a
1u7pD00
D:2-162
1b
1u7pB00
B:2-163
1c
1u7pC00
C:2-164
1d
1u7pA00
A:1-164
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Acid_PPase_1u7pD01 (D:3-160)
1b: PFAM_Acid_PPase_1u7pD02 (D:3-160)
1c: PFAM_Acid_PPase_1u7pD03 (D:3-160)
1d: PFAM_Acid_PPase_1u7pD04 (D:3-160)
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Clan
:
HAD
(186)
Family
:
Acid_PPase
(3)
Mus musculus (Mouse)
(2)
1a
Acid_PPase-1u7pD01
D:3-160
1b
Acid_PPase-1u7pD02
D:3-160
1c
Acid_PPase-1u7pD03
D:3-160
1d
Acid_PPase-1u7pD04
D:3-160
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Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
Biol.Unit 4 (31 KB)
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