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1U74
Biol. Unit 2
Info
Asym.Unit (150 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
ELECTRON TRANSFER COMPLEX BETWEEN CYTOCHROME C AND CYTOCHROME C PEROXIDASE
Authors
:
B. R. Crane, S. A. Kang
Date
:
02 Aug 04 (Deposition) - 28 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Protein Complex, Heme, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. A. Kang, P. J. Marjavaara, B. R. Crane
Electron Transfer Between Cytochrome C And Cytochome C Peroxidase In Single Crystals.
J. Am. Chem. Soc. V. 126 10836 2004
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: PROTOPORPHYRIN IX CONTAINING ZN (ZNHa)
3b: PROTOPORPHYRIN IX CONTAINING ZN (ZNHb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
3
ZNH
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING ZN
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG C:48 , TRP C:51 , HIS C:52 , HIS C:175 , ZNH C:1201 , HOH C:1716
BINDING SITE FOR RESIDUE PO4 C 2201
2
AC4
SOFTWARE
PRO C:44 , VAL C:45 , VAL C:47 , ARG C:48 , TRP C:51 , ASP C:146 , LEU C:171 , MET C:172 , ALA C:174 , HIS C:175 , LEU C:177 , GLY C:178 , LYS C:179 , THR C:180 , HIS C:181 , ASN C:184 , SER C:185 , TRP C:191 , LEU C:232 , PHE C:266 , HOH C:1714 , PO4 C:2201
BINDING SITE FOR RESIDUE ZNH C 1201
3
AC6
SOFTWARE
ARG D:18 , CYS D:19 , GLN D:21 , CYS D:22 , HIS D:23 , VAL D:33 , GLY D:34 , PRO D:35 , LEU D:37 , ILE D:40 , ARG D:43 , SER D:45 , GLY D:46 , TYR D:51 , TYR D:53 , THR D:54 , ASN D:57 , TRP D:64 , MET D:69 , THR D:83 , LYS D:84 , MET D:85 , LEU D:99 , HOH D:1712
BINDING SITE FOR RESIDUE HEM D 1301
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_CCPR_YEAST_001 (I53I, chain C, )
2: VAR_CCPR_YEAST_002 (G152G, chain C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CCPR_YEAST_001
*
T
120
I
CCPR_YEAST
---
---
C
I
53
I
2
UniProt
VAR_CCPR_YEAST_002
*
D
219
G
CCPR_YEAST
---
---
C
G
152
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: CYTC (D:6-106)
2: PEROXIDASE_2 (C:43-54)
3: PEROXIDASE_1 (C:167-177)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC1_YEAST
7-108
1
-
D:6-106
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
CCPR_YEAST
110-121
1
-
C:43-54
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
CCPR_YEAST
234-244
1
-
C:167-177
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1u74b_ (B:)
1b: SCOP_d1u74d_ (D:)
2a: SCOP_d1u74a_ (A:)
2b: SCOP_d1u74c_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(49)
1a
d1u74b_
B:
1b
d1u74d_
D:
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Cytochrome c peroxidase, CCP
(170)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(170)
2a
d1u74a_
A:
2b
d1u74c_
C:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1u74B00 (B:1-108)
1b: CATH_1u74D00 (D:1-108)
2a: CATH_1u74A01 (A:4-144,A:266-294)
2b: CATH_1u74C01 (C:4-144,C:266-294)
3a: CATH_1u74A02 (A:145-265)
3b: CATH_1u74C02 (C:145-265)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
1u74B00
B:1-108
1b
1u74D00
D:1-108
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Baker's yeast (Saccharomyces cerevisiae)
(120)
2a
1u74A01
A:4-144,A:266-294
2b
1u74C01
C:4-144,C:266-294
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Baker's yeast (Saccharomyces cerevisiae)
(120)
3a
1u74A02
A:145-265
3b
1u74C02
C:145-265
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cytochrom_C_1u74D01 (D:8-106)
1b: PFAM_Cytochrom_C_1u74D02 (D:8-106)
2a: PFAM_peroxidase_1u74C01 (C:24-254)
2b: PFAM_peroxidase_1u74C02 (C:24-254)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
Cytochrom_C-1u74D01
D:8-106
1b
Cytochrom_C-1u74D02
D:8-106
Clan
:
no clan defined [family: peroxidase]
(92)
Family
:
peroxidase
(92)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(54)
2a
peroxidase-1u74C01
C:24-254
2b
peroxidase-1u74C02
C:24-254
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Asymmetric Unit 1
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