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1U6Z
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
STRUCTURE OF AN E. COLI EXOPOLYPHOSPHATASE: INSIGHT INTO THE PROCESSIVE HYDROLYSIS OF POLYPHOSPHATE AND ITS REGULATION
Authors
:
M. S. Hasson, J. Alvarado, D. A. Sanders
Date
:
02 Aug 04 (Deposition) - 06 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha/Beta Protein, Askha (Acetate And Sugar Kinases, Hsc70, Actin) Superfamily, Hd Metal Dependent Phosphohydrolase Superfamily, Polyphosphate, Twenty-Nine Sulfates, Hydrolase
(Keyword Search:
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Reference
:
J. Alvarado, A. Ghosh, T. Janovitz, A. Jauregui, M. S. Hasson, D. A. Sanders
Origin Of Exopolyphosphatase Processivity: Fusion Of An Askha Phosphotransferase And A Cyclic Nucleotide Phosphodiesterase Homolog.
Structure V. 14 1263 2006
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Hetero Components
(1, 29)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
29
Ligand/Ion
SULFATE ION
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:19 , SER A:20 , THR A:89 , GLY A:145 , GLY A:146 , GLY A:147 , SER A:148 , HOH A:952 , HOH A:957 , HOH A:1025 , HOH A:1089 , HOH A:1090
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
ASN A:21 , SER A:217 , GLY A:218 , ARG A:267 , HOH A:1059 , HOH A:1099
BINDING SITE FOR RESIDUE SO4 A 702
03
AC3
SOFTWARE
LYS A:42 , ARG A:44 , SER A:264 , ARG A:267 , HOH A:1035 , HOH A:1102
BINDING SITE FOR RESIDUE SO4 A 703
04
AC4
SOFTWARE
TRP A:210 , ILE A:287 , ARG A:288 , GLU A:289 , HOH A:1098
BINDING SITE FOR RESIDUE SO4 A 704
05
AC5
SOFTWARE
HIS A:378 , ARG A:413 , HOH A:1020 , HOH A:1145 , HOH A:1204 , THR B:200 , HOH B:1011
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
ARG A:165 , ARG A:166 , LYS A:197 , HOH A:1106 , HOH A:1107 , HOH A:1160 , HOH A:1190
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
SER A:379 , GLY A:380 , ARG A:413 , ARG B:166 , HOH B:1010
BINDING SITE FOR RESIDUE SO4 A 707
08
AC8
SOFTWARE
LYS A:428 , LYS A:429 , HOH A:1012 , HOH A:1016 , HOH A:1064
BINDING SITE FOR RESIDUE SO4 A 708
09
AC9
SOFTWARE
LYS A:428 , LYS A:430 , GLN A:431 , HOH A:1141
BINDING SITE FOR RESIDUE SO4 A 709
10
BC1
SOFTWARE
HIS A:356 , PRO A:357 , GLN A:358 , HOH A:1154
BINDING SITE FOR RESIDUE SO4 A 710
11
BC2
SOFTWARE
SER A:316 , ARG A:364 , TRP A:365 , MET A:368 , HOH A:1126
BINDING SITE FOR RESIDUE SO4 A 711
12
BC3
SOFTWARE
HIS A:466 , GLY A:498 , ARG A:500 , HOH A:1209
BINDING SITE FOR RESIDUE SO4 A 712
13
BC4
SOFTWARE
GLY B:19 , SER B:20 , THR B:89 , HIS B:90 , GLU B:121 , GLY B:145 , GLY B:146 , GLY B:147 , SER B:148 , HOH B:846 , HOH B:982 , HOH B:1018 , HOH B:1129
BINDING SITE FOR RESIDUE SO4 B 801
14
BC5
SOFTWARE
ASN B:21 , SER B:22 , SER B:217 , GLY B:218 , ARG B:267 , HOH B:877 , HOH B:972 , HOH B:993 , HOH B:1108
BINDING SITE FOR RESIDUE SO4 B 802
15
BC6
SOFTWARE
LYS B:42 , SER B:264 , ARG B:267 , SO4 B:814 , HOH B:854 , HOH B:923
BINDING SITE FOR RESIDUE SO4 B 803
16
BC7
SOFTWARE
TRP B:210 , ARG B:288 , GLU B:289 , HOH B:1063 , HOH B:1071
BINDING SITE FOR RESIDUE SO4 B 804
17
BC8
SOFTWARE
THR A:200 , ARG B:413 , ASN B:447 , HOH B:852 , HOH B:998 , HOH B:999 , HOH B:1000 , HOH B:1137
BINDING SITE FOR RESIDUE SO4 B 805
18
BC9
SOFTWARE
ARG B:165 , ARG B:166 , LYS B:197 , HOH B:1010 , HOH B:1050 , HOH B:1052
BINDING SITE FOR RESIDUE SO4 B 806
19
CC1
SOFTWARE
SER B:379 , GLY B:380 , HIS B:382 , ARG B:413
BINDING SITE FOR RESIDUE SO4 B 807
20
CC2
SOFTWARE
LYS B:428 , LYS B:429 , HOH B:1092 , HOH B:1099
BINDING SITE FOR RESIDUE SO4 B 808
21
CC3
SOFTWARE
LYS B:353 , LYS B:428 , LYS B:430 , GLN B:431 , HOH B:1094
BINDING SITE FOR RESIDUE SO4 B 809
22
CC4
SOFTWARE
HIS B:356 , PRO B:357 , GLN B:358
BINDING SITE FOR RESIDUE SO4 B 810
23
CC5
SOFTWARE
SER B:316 , ARG B:364 , TRP B:365 , HOH B:902
BINDING SITE FOR RESIDUE SO4 B 811
24
CC6
SOFTWARE
HIS B:466 , ALA B:497 , GLY B:498 , ARG B:500
BINDING SITE FOR RESIDUE SO4 B 812
25
CC7
SOFTWARE
ASP B:49 , GLY B:50 , SER B:58 , GLU B:60 , ARG B:64
BINDING SITE FOR RESIDUE SO4 B 813
26
CC8
SOFTWARE
SER A:330 , HOH A:995 , HOH A:1004 , HOH A:1046 , LYS B:42 , LYS B:221 , SO4 B:803
BINDING SITE FOR RESIDUE SO4 B 814
27
CC9
SOFTWARE
HIS A:327 , SER B:264 , GLU B:265 , HOH B:947
BINDING SITE FOR RESIDUE SO4 B 815
28
DC1
SOFTWARE
HIS B:46 , ARG B:64 , ARG B:138 , GLN B:208 , HOH B:1116
BINDING SITE FOR RESIDUE SO4 B 816
29
DC2
SOFTWARE
HIS A:327 , HOH A:977 , HOH A:1164 , PRO B:261 , HIS B:327
BINDING SITE FOR RESIDUE SO4 A 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1u6za1 (A:313-509)
1b: SCOP_d1u6zb1 (B:313-511)
2a: SCOP_d1u6za2 (A:12-135)
2b: SCOP_d1u6za3 (A:136-312)
2c: SCOP_d1u6zb2 (B:12-135)
2d: SCOP_d1u6zb3 (B:136-312)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
Ppx associated domain
(2)
Protein domain
:
Exopolyphosphatase Ppx C-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1u6za1
A:313-509
1b
d1u6zb1
B:313-511
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Ppx/GppA phosphatase
(5)
Protein domain
:
Exopolyphosphatase Ppx
(4)
Escherichia coli [TaxId: 562]
(2)
2a
d1u6za2
A:12-135
2b
d1u6za3
A:136-312
2c
d1u6zb2
B:12-135
2d
d1u6zb3
B:136-312
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ppx_GppA_1u6zB01 (B:26-309)
1b: PFAM_Ppx_GppA_1u6zB02 (B:26-309)
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Clan
:
Actin_ATPase
(173)
Family
:
Ppx-GppA
(4)
Escherichia coli O157:H7
(1)
1a
Ppx-GppA-1u6zB01
B:26-309
1b
Ppx-GppA-1u6zB02
B:26-309
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