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1U67
Biol. Unit 1
Info
Asym.Unit (95 KB)
Biol.Unit 1 (170 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARACHIDONIC ACID BOUND TO A MUTANT OF PROSTAGLADIN H SYNTHASE-1 THAT FORMS PREDOMINANTLY 11-HPETE.
Authors
:
C. A. Harman, C. J. Rieke, R. M. Garavito, W. L. Smith
Date
:
29 Jul 04 (Deposition) - 07 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cyclooxgenase, Arachidonic Acid, Heme, Eicosanoid, 11-Hete, Cox-1, Cox-2, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Harman, C. J. Rieke, R. M. Garavito, W. L. Smith
Crystal Structure Of Arachidonic Acid Bound To A Mutant Of Prostaglandin Endoperoxide H Synthase-1 That Forms Predominantly 11-Hydroperoxyeicosatetraenoic Acid.
J. Biol. Chem. V. 279 42929 2004
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Hetero Components
(6, 28)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: B-OCTYLGLUCOSIDE (BOGa)
3b: B-OCTYLGLUCOSIDE (BOGb)
3c: B-OCTYLGLUCOSIDE (BOGc)
3d: B-OCTYLGLUCOSIDE (BOGd)
4a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
2
Ligand/Ion
ARACHIDONIC ACID
2
BMA
4
Ligand/Ion
BETA-D-MANNOSE
3
BOG
8
Ligand/Ion
B-OCTYLGLUCOSIDE
4
COH
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:38 , TYR A:55 , ASN A:68 , NDG A:662
BINDING SITE FOR RESIDUE NAG A 661
02
AC2
SOFTWARE
TYR A:55 , ASP A:584 , NAG A:661
BINDING SITE FOR RESIDUE NDG A 662
03
AC3
SOFTWARE
ASN A:144 , TYR A:147 , LEU A:238 , NAG A:672 , BOG A:752
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
MET A:216 , TYR A:242 , NAG A:671 , BMA A:673
BINDING SITE FOR RESIDUE NAG A 672
05
AC5
SOFTWARE
NAG A:672 , BMA A:674
BINDING SITE FOR RESIDUE BMA A 673
06
AC6
SOFTWARE
BMA A:673
BINDING SITE FOR RESIDUE BMA A 674
07
AC7
SOFTWARE
GLY A:278 , TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , NDG A:682
BINDING SITE FOR RESIDUE NAG A 681
08
AC8
SOFTWARE
NAG A:681
BINDING SITE FOR RESIDUE NDG A 682
09
AC9
SOFTWARE
SER A:87 , PHE A:88 , PHE A:91
BINDING SITE FOR RESIDUE BOG A 750
10
BC1
SOFTWARE
PRO A:86 , LEU A:112 , VAL A:116 , VAL A:119 , ARG A:120 , LEU A:123 , GLU A:524 , HOH A:800
BINDING SITE FOR RESIDUE BOG A 751
11
BC2
SOFTWARE
ILE A:132 , ALA A:133 , TYR A:147 , PHE A:220 , TYR A:242 , PHE A:247 , NAG A:671
BINDING SITE FOR RESIDUE BOG A 752
12
BC3
SOFTWARE
ARG A:97 , TRP A:98
BINDING SITE FOR RESIDUE BOG A 753
13
BC4
SOFTWARE
TYR A:148 , GLN A:203 , THR A:206 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , PHE A:387 , HIS A:388 , MET A:391 , ILE A:444 , HIS A:446 , VAL A:447 , ASP A:450
BINDING SITE FOR RESIDUE COH A 601
14
BC5
SOFTWARE
VAL A:116 , ARG A:120 , ALA A:349 , TYR A:355 , TYR A:385 , PHE A:387 , ILE A:523 , ALA A:527 , SER A:530
BINDING SITE FOR RESIDUE ACD A 700
[
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R97H, chain A, )
2: VAR_PGH1_SHEEP_002 (G164G, chain A, )
3: VAR_PGH1_SHEEP_003 (R456Q, chain A, )
4: VAR_PGH1_SHEEP_004 (E520K, chain A, )
5: VAR_PGH1_SHEEP_005 (E520Q, chain A, )
6: VAR_PGH1_SHEEP_006 (M525I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
A
R
97
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
A
G
164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
A
R
456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
A
E
520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
A
E
520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
A
M
525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:32-70)
2: PEROXIDASE_3 (A:110-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
2
A:32-70
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
2
A:110-584
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1u67a1 (A:74-584)
2a: SCOP_d1u67a2 (A:32-73)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
1a
d1u67a1
A:74-584
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
2a
d1u67a2
A:32-73
[
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]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1u67A02 (A:74-583)
2a: CATH_1u67A01 (A:33-73)
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Classes
(
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(
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Architectures
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(
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Sheep (Ovis aries)
(18)
1a
1u67A02
A:74-583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Sheep (Ovis aries)
(18)
2a
1u67A01
A:33-73
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_1u67A01 (A:142-582)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Ovis aries (Sheep)
(15)
1a
An_peroxidase-1u67A01
A:142-582
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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