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1U67
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (170 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARACHIDONIC ACID BOUND TO A MUTANT OF PROSTAGLADIN H SYNTHASE-1 THAT FORMS PREDOMINANTLY 11-HPETE.
Authors
:
C. A. Harman, C. J. Rieke, R. M. Garavito, W. L. Smith
Date
:
29 Jul 04 (Deposition) - 07 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cyclooxgenase, Arachidonic Acid, Heme, Eicosanoid, 11-Hete, Cox-1, Cox-2, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Harman, C. J. Rieke, R. M. Garavito, W. L. Smith
Crystal Structure Of Arachidonic Acid Bound To A Mutant Of Prostaglandin Endoperoxide H Synthase-1 That Forms Predominantly 11-Hydroperoxyeicosatetraenoic Acid.
J. Biol. Chem. V. 279 42929 2004
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: B-OCTYLGLUCOSIDE (BOGa)
3b: B-OCTYLGLUCOSIDE (BOGb)
3c: B-OCTYLGLUCOSIDE (BOGc)
3d: B-OCTYLGLUCOSIDE (BOGd)
4a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
1
Ligand/Ion
ARACHIDONIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
BOG
4
Ligand/Ion
B-OCTYLGLUCOSIDE
4
COH
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:38 , TYR A:55 , ASN A:68 , NDG A:662
BINDING SITE FOR RESIDUE NAG A 661
02
AC2
SOFTWARE
TYR A:55 , ASP A:584 , NAG A:661
BINDING SITE FOR RESIDUE NDG A 662
03
AC3
SOFTWARE
ASN A:144 , TYR A:147 , LEU A:238 , NAG A:672 , BOG A:752
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
MET A:216 , TYR A:242 , NAG A:671 , BMA A:673
BINDING SITE FOR RESIDUE NAG A 672
05
AC5
SOFTWARE
NAG A:672 , BMA A:674
BINDING SITE FOR RESIDUE BMA A 673
06
AC6
SOFTWARE
BMA A:673
BINDING SITE FOR RESIDUE BMA A 674
07
AC7
SOFTWARE
GLY A:278 , TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , NDG A:682
BINDING SITE FOR RESIDUE NAG A 681
08
AC8
SOFTWARE
NAG A:681
BINDING SITE FOR RESIDUE NDG A 682
09
AC9
SOFTWARE
SER A:87 , PHE A:88 , PHE A:91
BINDING SITE FOR RESIDUE BOG A 750
10
BC1
SOFTWARE
PRO A:86 , LEU A:112 , VAL A:116 , VAL A:119 , ARG A:120 , LEU A:123 , GLU A:524 , HOH A:800
BINDING SITE FOR RESIDUE BOG A 751
11
BC2
SOFTWARE
ILE A:132 , ALA A:133 , TYR A:147 , PHE A:220 , TYR A:242 , PHE A:247 , NAG A:671
BINDING SITE FOR RESIDUE BOG A 752
12
BC3
SOFTWARE
ARG A:97 , TRP A:98
BINDING SITE FOR RESIDUE BOG A 753
13
BC4
SOFTWARE
TYR A:148 , GLN A:203 , THR A:206 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , PHE A:387 , HIS A:388 , MET A:391 , ILE A:444 , HIS A:446 , VAL A:447 , ASP A:450
BINDING SITE FOR RESIDUE COH A 601
14
BC5
SOFTWARE
VAL A:116 , ARG A:120 , ALA A:349 , TYR A:355 , TYR A:385 , PHE A:387 , ILE A:523 , ALA A:527 , SER A:530
BINDING SITE FOR RESIDUE ACD A 700
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R97H, chain A, )
2: VAR_PGH1_SHEEP_002 (G164G, chain A, )
3: VAR_PGH1_SHEEP_003 (R456Q, chain A, )
4: VAR_PGH1_SHEEP_004 (E520K, chain A, )
5: VAR_PGH1_SHEEP_005 (E520Q, chain A, )
6: VAR_PGH1_SHEEP_006 (M525I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
A
R
97
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
A
G
164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
A
R
456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
A
E
520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
A
E
520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
A
M
525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:32-70)
2: PEROXIDASE_3 (A:110-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
1
A:32-70
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
1
A:110-584
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1u67a1 (A:74-584)
2a: SCOP_d1u67a2 (A:32-73)
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Classes
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
1a
d1u67a1
A:74-584
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
2a
d1u67a2
A:32-73
[
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]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1u67A02 (A:74-583)
2a: CATH_1u67A01 (A:33-73)
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Classes
(
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(
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Sheep (Ovis aries)
(18)
1a
1u67A02
A:74-583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Sheep (Ovis aries)
(18)
2a
1u67A01
A:33-73
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_1u67A01 (A:142-582)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Ovis aries (Sheep)
(15)
1a
An_peroxidase-1u67A01
A:142-582
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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