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1U60
Biol. Unit 4
Info
Asym.Unit (216 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (210 KB)
Biol.Unit 4 (209 KB)
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(1)
Title
:
MCSG APC5046 PROBABLE GLUTAMINASE YBAS
Authors
:
C. Chang, M. E. Cuff, A. Joachimiak, A. Savchenko, A. Edwards, T. Skarin Center For Structural Genomics (Mcsg)
Date
:
28 Jul 04 (Deposition) - 07 Sep 04 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Structural Genomics, Apc5046, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Brown, A. Singer, M. Proudfoot, T. Skarina, Y. Kim, C. Chang, I. Dementieva, E. Kuznetsova, C. F. Gonzalez, A. Joachimiak, A. Savchenko, A. F. Yakunin
Functional And Structural Characterization Of Four Glutaminases From Escherichia Coli And Bacillus Subtilis.
Biochemistry V. 47 5724 2008
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
6
Ligand/Ion
FORMIC ACID
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:294 , HOH A:1377 , THR B:16 , GLN B:17
BINDING SITE FOR RESIDUE EDO A 1203
02
AC2
SOFTWARE
LYS A:88 , GLY A:179 , TYR A:180 , EDO A:1205 , HOH A:1527
BINDING SITE FOR RESIDUE EDO A 1204
03
AC3
SOFTWARE
ASP A:87 , LYS A:88 , EDO A:1204
BINDING SITE FOR RESIDUE EDO A 1205
04
AC4
SOFTWARE
PHE A:98 , GLY A:287 , FMT A:1212 , HOH A:1413 , HOH A:1415
BINDING SITE FOR RESIDUE EDO A 1211
05
AC5
SOFTWARE
ASP A:59 , ASN A:201 , HOH A:1229 , HOH A:1285 , HOH A:1374
BINDING SITE FOR RESIDUE EDO A 1217
06
AC6
SOFTWARE
PRO A:37 , GLN A:39 , LEU A:40 , HOH A:1380 , HOH A:1462 , HOH A:1489 , HIS D:222 , HOH D:1312
BINDING SITE FOR RESIDUE EDO A 1219
07
AC7
SOFTWARE
ASN B:128 , ARG B:138
BINDING SITE FOR RESIDUE EDO B 1210
08
AC8
SOFTWARE
GLU B:65 , GLU B:161 , ASN B:168 , TYR B:192 , THR B:193 , HOH B:1288 , HOH B:1404 , HOH B:1413
BINDING SITE FOR RESIDUE EDO B 1224
09
AC9
SOFTWARE
VAL C:52 , ARG C:224 , GLN C:227 , HOH C:1284 , HOH C:1298 , HOH C:1316 , HOH C:1382
BINDING SITE FOR RESIDUE EDO C 1208
10
BC1
SOFTWARE
GLU D:65 , GLU D:161 , ASN D:168 , THR D:193 , CYS D:196 , HOH D:1249 , HOH D:1293 , HOH D:1372
BINDING SITE FOR RESIDUE EDO D 1213
11
BC2
SOFTWARE
GLY D:287 , FMT D:1215 , HOH D:1418 , HOH D:1436 , HOH D:1486
BINDING SITE FOR RESIDUE EDO D 1214
12
BC3
SOFTWARE
GLN D:25 , ASN D:26
BINDING SITE FOR RESIDUE EDO D 1216
13
BC4
SOFTWARE
GLN A:25 , ASP A:284 , EDO A:1211 , HOH A:1433
BINDING SITE FOR RESIDUE FMT A 1212
14
BC5
SOFTWARE
LEU A:199 , HOH A:1278 , HOH A:1347 , HOH A:1372
BINDING SITE FOR RESIDUE FMT A 1218
15
BC6
SOFTWARE
GLN B:39 , ALA B:178 , FMT B:1207
BINDING SITE FOR RESIDUE FMT B 1206
16
BC7
SOFTWARE
GLN B:39 , GLY B:179 , TYR B:180 , TYR B:182 , FMT B:1206 , HOH B:1410 , HOH B:1444
BINDING SITE FOR RESIDUE FMT B 1207
17
BC8
SOFTWARE
SER B:100 , VAL B:101 , ILE B:102 , HOH B:1460 , GLU C:105 , HOH C:1430
BINDING SITE FOR RESIDUE FMT B 1209
18
BC9
SOFTWARE
ASN B:22 , GLY B:23 , GLY B:24
BINDING SITE FOR RESIDUE FMT B 1225
19
CC1
SOFTWARE
ASN C:51 , VAL C:52 , GLU C:78 , HOH C:1427
BINDING SITE FOR RESIDUE FMT C 1222
20
CC2
SOFTWARE
ASN C:22 , GLY C:23 , ARG C:291
BINDING SITE FOR RESIDUE FMT C 1226
21
CC3
SOFTWARE
SER D:66 , TYR D:244 , VAL D:262 , EDO D:1214 , HOH D:1224 , HOH D:1242 , HOH D:1361
BINDING SITE FOR RESIDUE FMT D 1215
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u60a_ (A:)
1b: SCOP_d1u60b_ (B:)
1c: SCOP_d1u60c_ (C:)
1d: SCOP_d1u60d_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
Glutaminase
(5)
Protein domain
:
Probable glutaminase YbaS
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1u60a_
A:
1b
d1u60b_
B:
1c
d1u60c_
C:
1d
d1u60d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u60A00 (A:2-310)
1b: CATH_1u60B00 (B:2-310)
1c: CATH_1u60C00 (C:2-310)
1d: CATH_1u60D00 (D:2-310)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli. Organism_taxid: 562.
(91)
1a
1u60A00
A:2-310
1b
1u60B00
B:2-310
1c
1u60C00
C:2-310
1d
1u60D00
D:2-310
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glutaminase_1u60D01 (D:24-308)
1b: PFAM_Glutaminase_1u60D02 (D:24-308)
1c: PFAM_Glutaminase_1u60D03 (D:24-308)
1d: PFAM_Glutaminase_1u60D04 (D:24-308)
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)
Clan
:
Beta-lactamase
(210)
Family
:
Glutaminase
(4)
Escherichia coli (strain K12)
(1)
1a
Glutaminase-1u60D01
D:24-308
1b
Glutaminase-1u60D02
D:24-308
1c
Glutaminase-1u60D03
D:24-308
1d
Glutaminase-1u60D04
D:24-308
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