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1U5D
Biol. Unit 6
Info
Asym.Unit (87 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (22 KB)
Biol.Unit 3 (22 KB)
Biol.Unit 4 (23 KB)
Biol.Unit 5 (82 KB)
Biol.Unit 6 (83 KB)
Biol.Unit 7 (42 KB)
Biol.Unit 8 (43 KB)
Biol.Unit 9 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP55
Authors
:
Y. Tang, K. D. Swanson, B. G. Neel, M. J. Eck
Date
:
27 Jul 04 (Deposition) - 26 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Biol. Unit 6: A,B,C,D (1x)
Biol. Unit 7: A,B (1x)
Biol. Unit 8: C,D (1x)
Biol. Unit 9: B,C (1x)
Keywords
:
Ph Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tang, K. D. Swanson, B. G. Neel, M. J. Eck
Structural Basis For The Dimerization And Phosphoinositide Specificity Of The Src Kinase-Associated Phosphoproteins Skap55 And Skap-Hom
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:163 , ALA B:165 , PRO B:166 , HIS B:167 , ARG C:163 , ALA C:165 , PRO C:166 , HIS C:167
BINDING SITE FOR RESIDUE SO4 C 1001
2
AC2
SOFTWARE
LYS A:116 , SER A:118 , ARG A:131 , TYR A:142 , LYS A:152 , SO4 A:1007 , HOH A:1051 , HOH A:1094
BINDING SITE FOR RESIDUE SO4 A 1002
3
AC3
SOFTWARE
LYS C:116 , LYS C:119 , ARG C:131 , TYR C:142 , LYS C:152 , HOH C:1101
BINDING SITE FOR RESIDUE SO4 C 1003
4
AC4
SOFTWARE
LYS B:116 , ARG B:131 , TYR B:142 , LYS B:152 , HOH B:1018
BINDING SITE FOR RESIDUE SO4 B 1004
5
AC5
SOFTWARE
THR D:187 , HOH D:1042 , HOH D:1086
BINDING SITE FOR RESIDUE SO4 D 1005
6
AC6
SOFTWARE
LYS D:116 , LYS D:119 , GLN D:129 , ARG D:131 , TYR D:142 , LYS D:152 , HOH D:1084
BINDING SITE FOR RESIDUE SO4 D 1006
7
AC7
SOFTWARE
LYS A:116 , LYS A:117 , SER A:118 , LYS A:119 , HIS A:121 , ARG A:186 , SO4 A:1002 , HOH A:1051 , HOH A:1059 , HOH A:1105
BINDING SITE FOR RESIDUE SO4 A 1007
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_029811 (S161S, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029811
G
161
S
SKAP1_HUMAN
Polymorphism
2278868
A/B/C/D
S
161
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (A:108-210,B:108-210,C:108-210,D:10...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
SKAP1_HUMAN
107-210
4
A:108-210
B:108-210
C:108-210
D:108-210
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u5da1 (A:108-213)
1b: SCOP_d1u5db_ (B:)
1c: SCOP_d1u5dc_ (C:)
1d: SCOP_d1u5dd_ (D:)
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Protein Domains
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)
(
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Src kinase-associated phosphoprotein SKAP55 (SCAP1)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1u5da1
A:108-213
1b
d1u5db_
B:
1c
d1u5dc_
C:
1d
d1u5dd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u5dA00 (A:106-213)
1b: CATH_1u5dD00 (D:106-213)
1c: CATH_1u5dB00 (B:106-212)
1d: CATH_1u5dC00 (C:106-212)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1u5dA00
A:106-213
1b
1u5dD00
D:106-213
1c
1u5dB00
B:106-212
1d
1u5dC00
C:106-212
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PH_1u5dD01 (D:108-210)
1b: PFAM_PH_1u5dD02 (D:108-210)
1c: PFAM_PH_1u5dD03 (D:108-210)
1d: PFAM_PH_1u5dD04 (D:108-210)
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Clan
:
PH
(111)
Family
:
PH
(71)
Homo sapiens (Human)
(42)
1a
PH-1u5dD01
D:108-210
1b
PH-1u5dD02
D:108-210
1c
PH-1u5dD03
D:108-210
1d
PH-1u5dD04
D:108-210
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Asym.Unit (87 KB)
Header - Asym.Unit
Biol.Unit 1 (22 KB)
Header - Biol.Unit 1
Biol.Unit 2 (22 KB)
Header - Biol.Unit 2
Biol.Unit 3 (22 KB)
Header - Biol.Unit 3
Biol.Unit 4 (23 KB)
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Biol.Unit 5 (82 KB)
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Biol.Unit 6 (83 KB)
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Biol.Unit 7 (42 KB)
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Biol.Unit 8 (43 KB)
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Biol.Unit 9 (42 KB)
Header - Biol.Unit 9
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