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1U3W
Asym. Unit
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Asym.Unit (138 KB)
Biol.Unit 1 (132 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN ALCOHOL DEHYDROGENASE GAMMA-2-GAMMA-2 ISOFORM COMPLEXED WITH N-1-METHYLHEPTYLFORMAMIDE DETERMINED TO 1.45 ANGSTROM RESOLUTION
Authors
:
B. J. Gibbons, T. D. Hurley
Date
:
23 Jul 04 (Deposition) - 26 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Gibbons, T. D. Hurley
Structure Of Three Class I Human Alcohol Dehydrogenases Complexed With Isoenzyme Specific Formamide Inhibitors
Biochemistry V. 43 12555 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 1-METHYLHEPTYLFORMAMIDE (FXYa)
1b: 1-METHYLHEPTYLFORMAMIDE (FXYb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FXY
2
Ligand/Ion
1-METHYLHEPTYLFORMAMIDE
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111
BINDING SITE FOR RESIDUE ZN A 375
2
AC2
SOFTWARE
CYS A:46 , HIS A:67 , CYS A:174 , NAD A:1377 , FXY A:1378
BINDING SITE FOR RESIDUE ZN A 376
3
AC3
SOFTWARE
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111
BINDING SITE FOR RESIDUE ZN B 375
4
AC4
SOFTWARE
CYS B:46 , HIS B:67 , CYS B:174 , NAD B:2377 , FXY B:2378
BINDING SITE FOR RESIDUE ZN B 376
5
AC5
SOFTWARE
ARG A:47 , SER A:48 , HIS A:51 , CYS A:174 , THR A:178 , GLY A:199 , GLY A:201 , GLY A:202 , VAL A:203 , ASP A:223 , ILE A:224 , LYS A:228 , VAL A:268 , ILE A:269 , GLN A:271 , THR A:274 , VAL A:292 , GLY A:293 , VAL A:294 , ALA A:317 , ILE A:318 , PHE A:319 , LEU A:362 , ARG A:369 , ZN A:376 , FXY A:1378 , HOH A:1379 , HOH A:1389 , HOH A:1406 , HOH A:1464 , HOH A:1487 , HOH A:1731 , HOH A:1818
BINDING SITE FOR RESIDUE NAD A 1377
6
AC6
SOFTWARE
ARG B:47 , SER B:48 , HIS B:51 , CYS B:174 , THR B:178 , GLY B:199 , GLY B:201 , GLY B:202 , VAL B:203 , ASP B:223 , ILE B:224 , LYS B:228 , VAL B:268 , ILE B:269 , GLN B:271 , VAL B:292 , GLY B:293 , VAL B:294 , ALA B:317 , ILE B:318 , PHE B:319 , LEU B:362 , ARG B:369 , ZN B:376 , FXY B:2378 , HOH B:2379 , HOH B:2390 , HOH B:2416 , HOH B:2440 , HOH B:2497 , HOH B:2531 , HOH B:2618 , HOH B:2659 , HOH B:2679
BINDING SITE FOR RESIDUE NAD B 2377
7
AC7
SOFTWARE
CYS A:46 , SER A:48 , HIS A:67 , PHE A:93 , CYS A:174 , ZN A:376 , NAD A:1377
BINDING SITE FOR RESIDUE FXY A 1378
8
AC8
SOFTWARE
MET A:306 , CYS B:46 , SER B:48 , HIS B:67 , PHE B:93 , CYS B:174 , ZN B:376 , NAD B:2377
BINDING SITE FOR RESIDUE FXY B 2378
[
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]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023992 (R47H, chain A/B, )
2: VAR_023993 (P165S, chain A/B, )
3: VAR_000428 (Q271Q, chain A/B, )
4: VAR_000429 (V349V, chain A/B, )
5: VAR_023994 (P351T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023992
R
48
H
ADH1G_HUMAN
Polymorphism
35385902
A/B
R
47
H
2
UniProt
VAR_023993
P
166
S
ADH1G_HUMAN
Polymorphism
---
A/B
P
165
S
3
UniProt
VAR_000428
R
272
Q
ADH1G_HUMAN
Polymorphism
1693482
A/B
Q
271
Q
4
UniProt
VAR_000429
I
350
V
ADH1G_HUMAN
Polymorphism
698
A/B
V
349
V
5
UniProt
VAR_023994
P
352
T
ADH1G_HUMAN
Polymorphism
35719513
A/B
P
351
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:66-80,B:66-80)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH1G_HUMAN
67-81
2
A:66-80
B:66-80
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1u3wa1 (A:1-162,A:339-374)
1b: SCOP_d1u3wb1 (B:1-162,B:339-374)
2a: SCOP_d1u3wa2 (A:163-338)
2b: SCOP_d1u3wb2 (B:163-338)
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Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1u3wa1
A:1-162,A:339-374
1b
d1u3wb1
B:1-162,B:339-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1u3wa2
A:163-338
2b
d1u3wb2
B:163-338
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1u3wA02 (A:179-317)
1b: CATH_1u3wB02 (B:179-317)
2a: CATH_1u3wA01 (A:1-178,A:318-374)
2b: CATH_1u3wB01 (B:1-178,B:318-374)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1u3wA02
A:179-317
1b
1u3wB02
B:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1u3wA01
A:1-178,A:318-374
2b
1u3wB01
B:1-178,B:318-374
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ADH_N_1u3wB01 (B:33-160)
1b: PFAM_ADH_N_1u3wB02 (B:33-160)
2a: PFAM_ADH_zinc_N_1u3wB03 (B:202-336)
2b: PFAM_ADH_zinc_N_1u3wB04 (B:202-336)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Homo sapiens (Human)
(18)
1a
ADH_N-1u3wB01
B:33-160
1b
ADH_N-1u3wB02
B:33-160
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Homo sapiens (Human)
(24)
2a
ADH_zinc_N-1u3wB03
B:202-336
2b
ADH_zinc_N-1u3wB04
B:202-336
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