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1U35
Asym. Unit
Info
Asym.Unit (247 KB)
Biol.Unit 1 (241 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
Authors
:
S. Chakravarthy, S. K. Gundimella, C. Caron, P. Y. Perche, J. R. Pehrson, S. Khochbin, K. Luger
Date
:
20 Jul 04 (Deposition) - 27 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Nucleosome, Ncp, Histone Fold, Histone Variant, Macroh2A, Structural Protein/Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chakravarthy, S. K. Gundimella, C. Caron, P. Y. Perche, J. R. Pehrson, S. Khochbin, K. Luger
Structural Characterization Of The Histone Variant Macroh2A.
Mol. Cell. Biol. V. 25 7616 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H3_2 (A:466-474,E:666-674)
2: HISTONE_H2B (D:1289-1311,H:1489-1511)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H31_MOUSE
67-75
2
A:466-474
E:666-674
2
HISTONE_H2B
PS00357
Histone H2B signature.
H2B3A_MOUSE
93-115
2
D:1289-1311
H:1489-1511
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (B:24-102 | F:220-302)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000087714
1
ENSMUSE00000906044
chr13:
21826903-21827329
427
H4_MOUSE
1-124
124
2
B:24-102
F:220-302
79
83
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SCOP Domains
(5, 8)
Info
All SCOP Domains
1a: SCOP_d1u35g_ (G:)
2a: SCOP_d1u35b_ (B:)
2b: SCOP_d1u35f_ (F:)
2c: SCOP_d1u35h_ (H:)
3a: SCOP_d1u35d1 (D:1230-1322)
4a: SCOP_d1u35a1 (A:438-535)
4b: SCOP_d1u35e1 (E:638-735)
5a: SCOP_d1u35c1 (C:814-919)
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Protein Domains
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Organisms
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)
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Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
automated matches
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d1u35g_
G:
Mouse (Mus musculus) [TaxId: 10090]
(1)
2a
d1u35b_
B:
2b
d1u35f_
F:
2c
d1u35h_
H:
Protein domain
:
Histone H2B
(48)
Mouse (Mus musculus), H2Ba [TaxId: 10090]
(2)
3a
d1u35d1
D:1230-1322
Protein domain
:
Histone H3
(58)
Mouse (Mus musculus), H3.1 [TaxId: 10090]
(1)
4a
d1u35a1
A:438-535
4b
d1u35e1
E:638-735
Protein domain
:
macro-H2A.1, histone domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
5a
d1u35c1
C:814-919
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1u35A00 (A:438-535)
1b: CATH_1u35C00 (C:814-919)
1c: CATH_1u35G00 (G:1014-1119)
1d: CATH_1u35B00 (B:24-102)
1e: CATH_1u35E00 (E:638-735)
1f: CATH_1u35H00 (H:1427-1522)
1g: CATH_1u35D00 (D:1230-1322)
1h: CATH_1u35F00 (F:220-302)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Histone, subunit A
(62)
Homologous Superfamily
:
Histone, subunit A
(62)
Human (Homo sapiens)
(28)
1a
1u35A00
A:438-535
1b
1u35C00
C:814-919
1c
1u35G00
G:1014-1119
1d
1u35B00
B:24-102
1e
1u35E00
E:638-735
1f
1u35H00
H:1427-1522
1g
1u35D00
D:1230-1322
1h
1u35F00
F:220-302
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Histone_1u35G01 (G:1017-1090)
1b: PFAM_Histone_1u35G02 (G:1017-1090)
2a: PFAM_Histone_1u35H01 (H:1428-1498)
2b: PFAM_Histone_1u35H02 (H:1428-1498)
2c: PFAM_Histone_1u35E01 (E:657-731)
2d: PFAM_Histone_1u35E02 (E:657-731)
2e: PFAM_Histone_1u35F01 (F:224-293)
2f: PFAM_Histone_1u35F02 (F:224-293)
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Clan
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Histone
(49)
Family
:
Histone
(46)
Homo sapiens (Human)
(6)
1a
Histone-1u35G01
G:1017-1090
1b
Histone-1u35G02
G:1017-1090
Mus musculus (Mouse)
(1)
2a
Histone-1u35H01
H:1428-1498
2b
Histone-1u35H02
H:1428-1498
2c
Histone-1u35E01
E:657-731
2d
Histone-1u35E02
E:657-731
2e
Histone-1u35F01
F:224-293
2f
Histone-1u35F02
F:224-293
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Asymmetric Unit 1
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Asym.Unit (247 KB)
Header - Asym.Unit
Biol.Unit 1 (241 KB)
Header - Biol.Unit 1
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