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1U31
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (121 KB)
Biol.Unit 4 (122 KB)
Biol.Unit 5 (121 KB)
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(1)
Title
:
RECOMBINANT HUMAN HEART TRANSHYDROGENASE DIII BOUND WITH NADPH
Authors
:
O. C. Mather, A. Singh, G. I. Van Boxel, S. A. White, J. B. Jackson
Date
:
20 Jul 04 (Deposition) - 25 Jan 05 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: B (2x)
Biol. Unit 5: A (2x)
Keywords
:
Nad(P) Transhydrogenase, Nadp+, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. C. Mather, A. Singh, G. I. Van Boxel, S. A. White, J. B. Jackson
Active-Site Conformational Changes Associated With Hydride Transfer In Proton-Translocating Transhydrogenase.
Biochemistry V. 43 10952 2004
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:164
BINDING SITE FOR RESIDUE SO4 A 430
2
AC2
SOFTWARE
ARG B:164 , HOH B:552
BINDING SITE FOR RESIDUE SO4 B 440
3
AC3
SOFTWARE
TYR A:54 , GLY A:55 , ALA A:59 , VAL A:86 , ALA A:87 , GLY A:88 , ARG A:89 , MET A:90 , PRO A:91 , GLY A:128 , ALA A:129 , ASN A:130 , ASP A:131 , THR A:132 , ALA A:146 , GLY A:147 , MET A:148 , LYS A:163 , ARG A:164 , SER A:165 , VAL A:168 , GLY A:169 , TYR A:170 , GLY A:188 , ASP A:189 , ALA A:190 , GOL A:410 , HOH A:432 , HOH A:433 , HOH A:437 , HOH A:442 , HOH A:453 , HOH A:518
BINDING SITE FOR RESIDUE NDP A 300
4
AC4
SOFTWARE
GLY B:53 , TYR B:54 , GLY B:55 , ALA B:59 , VAL B:86 , ALA B:87 , GLY B:88 , ARG B:89 , MET B:90 , PRO B:91 , GLY B:128 , ALA B:129 , ASN B:130 , ASP B:131 , THR B:132 , LYS B:163 , ARG B:164 , SER B:165 , VAL B:168 , GLY B:169 , TYR B:170 , ASP B:189 , ALA B:190 , GOL B:420 , HOH B:466 , HOH B:468 , HOH B:479 , HOH B:514 , HOH B:552 , HOH B:557
BINDING SITE FOR RESIDUE NDP B 400
5
AC5
SOFTWARE
HIS A:84 , VAL A:86 , ASP A:131 , ILE A:145 , PRO A:149 , VAL A:150 , NDP A:300
BINDING SITE FOR RESIDUE GOL A 410
6
AC6
SOFTWARE
HIS B:84 , ASP B:131 , ILE B:145 , MET B:148 , NDP B:400 , HOH B:468 , HOH B:526
BINDING SITE FOR RESIDUE GOL B 420
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068789 (L98P, chain A/B, )
2: VAR_068790 (A129P, chain A/B, )
3: VAR_068791 (N130K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068789
L
977
P
NNTM_HUMAN
Disease (GCCD4)
---
A/B
L
98
P
2
UniProt
VAR_068790
A
1008
P
NNTM_HUMAN
Disease (GCCD4)
---
A/B
A
129
P
3
UniProt
VAR_068791
N
1009
K
NNTM_HUMAN
Disease (GCCD4)
---
A/B
N
130
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.20 (A:23-53 | B:23-53)
Exon 1.21a (A:53-80 | B:53-80)
Exon 1.22 (A:80-120 | B:80-120)
Exon 1.23 (A:120-158 | B:120-158)
Exon 1.24b (A:159-204 | B:159-204)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.19/1.20
2: Boundary 1.20/1.21a
3: Boundary 1.21a/1.22
4: Boundary 1.22/1.23
5: Boundary 1.23/1.24b
6: Boundary 1.24b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000344920
2a
ENSE00002080482
chr5:
43603229-43603396
168
NNTM_HUMAN
-
0
0
-
-
1.3
ENST00000344920
3
ENSE00001148802
chr5:
43609245-43609448
204
NNTM_HUMAN
1-51
51
0
-
-
1.4a
ENST00000344920
4a
ENSE00001174952
chr5:
43613010-43613239
230
NNTM_HUMAN
51-127
77
0
-
-
1.5c
ENST00000344920
5c
ENSE00001174942
chr5:
43615950-43616167
218
NNTM_HUMAN
128-200
73
0
-
-
1.6b
ENST00000344920
6b
ENSE00000742787
chr5:
43619134-43619221
88
NNTM_HUMAN
200-229
30
0
-
-
1.7
ENST00000344920
7
ENSE00000742788
chr5:
43624134-43624222
89
NNTM_HUMAN
230-259
30
0
-
-
1.8
ENST00000344920
8
ENSE00000742789
chr5:
43628302-43628489
188
NNTM_HUMAN
259-322
64
0
-
-
1.9
ENST00000344920
9
ENSE00000742790
chr5:
43644294-43644427
134
NNTM_HUMAN
322-366
45
0
-
-
1.10a
ENST00000344920
10a
ENSE00000742791
chr5:
43644713-43644904
192
NNTM_HUMAN
367-430
64
0
-
-
1.11a
ENST00000344920
11a
ENSE00000742792
chr5:
43645459-43645612
154
NNTM_HUMAN
431-482
52
0
-
-
1.13
ENST00000344920
13
ENSE00000742794
chr5:
43649249-43649410
162
NNTM_HUMAN
482-536
55
0
-
-
1.14
ENST00000344920
14
ENSE00000742796
chr5:
43650579-43650689
111
NNTM_HUMAN
536-573
38
0
-
-
1.15a
ENST00000344920
15a
ENSE00000742797
chr5:
43651841-43651986
146
NNTM_HUMAN
573-621
49
0
-
-
1.16a
ENST00000344920
16a
ENSE00000742798
chr5:
43653120-43653315
196
NNTM_HUMAN
622-687
66
0
-
-
1.17
ENST00000344920
17
ENSE00000742799
chr5:
43655942-43656175
234
NNTM_HUMAN
687-765
79
0
-
-
1.18
ENST00000344920
18
ENSE00000742800
chr5:
43656755-43656915
161
NNTM_HUMAN
765-818
54
0
-
-
1.19
ENST00000344920
19
ENSE00000742801
chr5:
43659273-43659452
180
NNTM_HUMAN
819-878
60
0
-
-
1.20
ENST00000344920
20
ENSE00000742804
chr5:
43675613-43675772
160
NNTM_HUMAN
879-932
54
2
A:23-53
B:23-53
31
31
1.21a
ENST00000344920
21a
ENSE00000742805
chr5:
43677827-43677908
82
NNTM_HUMAN
932-959
28
2
A:53-80
B:53-80
28
28
1.22
ENST00000344920
22
ENSE00000742806
chr5:
43700221-43700339
119
NNTM_HUMAN
959-999
41
2
A:80-120
B:80-120
41
41
1.23
ENST00000344920
23
ENSE00000742807
chr5:
43702723-43702838
116
NNTM_HUMAN
999-1037
39
2
A:120-158
B:120-158
39
39
1.24b
ENST00000344920
24b
ENSE00001374370
chr5:
43704357-43705334
978
NNTM_HUMAN
1038-1086
49
2
A:159-204
B:159-204
46
46
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1u31a_ (A:)
1b: SCOP_d1u31b_ (B:)
View:
Select:
Label:
Classes
(
)
(
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Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Transhydrogenase domain III (dIII)
(22)
Protein domain
:
Transhydrogenase domain III (dIII)
(19)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1u31a_
A:
1b
d1u31b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1u31A00 (A:23-204)
1b: CATH_1u31B00 (B:23-204)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
TPP-binding domain
(120)
Human (Homo sapiens)
(9)
1a
1u31A00
A:23-204
1b
1u31B00
B:23-204
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PNTB_1u31B01 (B:23-201)
1b: PFAM_PNTB_1u31B02 (B:23-201)
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Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_DHS
(82)
Family
:
PNTB
(11)
Homo sapiens (Human)
(2)
1a
PNTB-1u31B01
B:23-201
1b
PNTB-1u31B02
B:23-201
[
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