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1U2H
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE N-TERMINALLY TRUNCATED HUMAN APEP-1
Authors
:
B. A. Manjasetty, C. Scheich, Y. Roske, F. H. Niesen, F. Gotz, K. Bussow, U. Heinemann
Date
:
19 Jul 04 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.96
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Structural Genomics, Ig-Fold I-Set, Rgd Motif, Homophilic Adhesion, Arterial Smooth Muscle Cells, Atherosclerosis, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Manjasetty, F. H. Niesen, C. Scheich, Y. Roske, F. Gotz, J. Behlke, V. Sievert, U. Heinemann, K. Bussow
X-Ray Structure Of Engineered Human Aortic Preferentially Expressed Protein-1 (Apeg-1)
Bmc Struct. Biol. V. 5 21 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041102 (R85C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041102
R
934
C
SPEG_HUMAN
Polymorphism
34398769
A
R
85
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.14e (A:17-23)
Exon 1.15 (A:24-53)
Exon 1.16a (A:53-112)
Exon 1.17 (A:112-112)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12b/1.14e
2: Boundary 1.14e/1.15
3: Boundary 1.15/1.16a
4: Boundary 1.16a/1.17
5: Boundary 1.17/1.18
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000312358
1a
ENSE00001914206
chr2:
220299568-220300087
520
SPEG_HUMAN
1-130
130
0
-
-
1.7a
ENST00000312358
7a
ENSE00001621911
chr2:
220309375-220309464
90
SPEG_HUMAN
130-160
31
0
-
-
1.8d
ENST00000312358
8d
ENSE00001740379
chr2:
220309547-220309883
337
SPEG_HUMAN
160-272
113
0
-
-
1.10g
ENST00000312358
10g
ENSE00001683185
chr2:
220312696-220313993
1298
SPEG_HUMAN
272-705
434
0
-
-
1.11b
ENST00000312358
11b
ENSE00001652702
chr2:
220315858-220316001
144
SPEG_HUMAN
705-753
49
0
-
-
1.12b
ENST00000312358
12b
ENSE00001649463
chr2:
220316347-220316529
183
SPEG_HUMAN
753-814
62
0
-
-
1.14e
ENST00000312358
14e
ENSE00001787181
chr2:
220326604-220326779
176
SPEG_HUMAN
814-872
59
1
A:17-23
7
1.15
ENST00000312358
15
ENSE00000965982
chr2:
220327020-220327108
89
SPEG_HUMAN
873-902
30
1
A:24-53
30
1.16a
ENST00000312358
16a
ENSE00001181966
chr2:
220329155-220329330
176
SPEG_HUMAN
902-961
60
1
A:53-112
60
1.17
ENST00000312358
17
ENSE00001141417
chr2:
220331896-220332156
261
SPEG_HUMAN
961-1048
88
1
A:112-112
1
1.18
ENST00000312358
18
ENSE00000966028
chr2:
220333300-220333458
159
SPEG_HUMAN
1048-1101
54
0
-
-
1.19
ENST00000312358
19
ENSE00000966029
chr2:
220333581-220333770
190
SPEG_HUMAN
1101-1164
64
0
-
-
1.20
ENST00000312358
20
ENSE00000966030
chr2:
220333878-220334101
224
SPEG_HUMAN
1164-1239
76
0
-
-
1.21b
ENST00000312358
21b
ENSE00001249952
chr2:
220336590-220336709
120
SPEG_HUMAN
1239-1279
41
0
-
-
1.21c
ENST00000312358
21c
ENSE00000966032
chr2:
220336949-220337053
105
SPEG_HUMAN
1279-1314
36
0
-
-
1.22a
ENST00000312358
22a
ENSE00001250213
chr2:
220337612-220337818
207
SPEG_HUMAN
1314-1383
70
0
-
-
1.22c
ENST00000312358
22c
ENSE00000966034
chr2:
220338226-220338349
124
SPEG_HUMAN
1383-1424
42
0
-
-
1.22d
ENST00000312358
22d
ENSE00000966035
chr2:
220338450-220338625
176
SPEG_HUMAN
1424-1483
60
0
-
-
1.23
ENST00000312358
23
ENSE00000966036
chr2:
220341592-220341704
113
SPEG_HUMAN
1483-1520
38
0
-
-
1.24
ENST00000312358
24
ENSE00000966037
chr2:
220341999-220342167
169
SPEG_HUMAN
1521-1577
57
0
-
-
1.25
ENST00000312358
25
ENSE00000966038
chr2:
220342411-220342507
97
SPEG_HUMAN
1577-1609
33
0
-
-
1.26
ENST00000312358
26
ENSE00000966039
chr2:
220342627-220342827
201
SPEG_HUMAN
1609-1676
68
0
-
-
1.27
ENST00000312358
27
ENSE00000966040
chr2:
220343866-220343923
58
SPEG_HUMAN
1676-1695
20
0
-
-
1.28
ENST00000312358
28
ENSE00000966041
chr2:
220344505-220344582
78
SPEG_HUMAN
1696-1721
26
0
-
-
1.29
ENST00000312358
29
ENSE00000966042
chr2:
220344684-220344862
179
SPEG_HUMAN
1722-1781
60
0
-
-
1.30
ENST00000312358
30
ENSE00000966043
chr2:
220345393-220345419
27
SPEG_HUMAN
1781-1790
10
0
-
-
1.31
ENST00000312358
31
ENSE00000966044
chr2:
220346026-220346178
153
SPEG_HUMAN
1790-1841
52
0
-
-
1.32
ENST00000312358
32
ENSE00000966045
chr2:
220346360-220346402
43
SPEG_HUMAN
1841-1855
15
0
-
-
1.33
ENST00000312358
33
ENSE00000966046
chr2:
220347506-220347574
69
SPEG_HUMAN
1856-1878
23
0
-
-
1.34
ENST00000312358
34
ENSE00000966047
chr2:
220347820-220349794
1975
SPEG_HUMAN
1879-2537
659
0
-
-
1.35
ENST00000312358
35
ENSE00001040074
chr2:
220350068-220350199
132
SPEG_HUMAN
2537-2581
45
0
-
-
1.36
ENST00000312358
36
ENSE00000966049
chr2:
220352916-220353032
117
SPEG_HUMAN
2581-2620
40
0
-
-
1.37
ENST00000312358
37
ENSE00000966050
chr2:
220353220-220353387
168
SPEG_HUMAN
2620-2676
57
0
-
-
1.38
ENST00000312358
38
ENSE00000966051
chr2:
220353500-220353622
123
SPEG_HUMAN
2676-2717
42
0
-
-
1.39
ENST00000312358
39
ENSE00000966052
chr2:
220353776-220353943
168
SPEG_HUMAN
2717-2773
57
0
-
-
1.40
ENST00000312358
40
ENSE00001461968
chr2:
220354058-220354661
604
SPEG_HUMAN
2773-2974
202
0
-
-
1.41
ENST00000312358
41
ENSE00001461964
chr2:
220355131-220355370
240
SPEG_HUMAN
2974-3054
81
0
-
-
1.42
ENST00000312358
42
ENSE00000843571
chr2:
220355455-220355678
224
SPEG_HUMAN
3054-3129
76
0
-
-
1.43a
ENST00000312358
43a
ENSE00000843572
chr2:
220356516-220356591
76
SPEG_HUMAN
3129-3154
26
0
-
-
1.44
ENST00000312358
44
ENSE00001250209
chr2:
220356833-220356982
150
SPEG_HUMAN
3154-3204
51
0
-
-
1.45c
ENST00000312358
45c
ENSE00001407226
chr2:
220357316-220358354
1039
SPEG_HUMAN
3204-3267
64
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1u2ha_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d1u2ha_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1u2hA00 (A:17-112)
View:
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Classes
(
)
(
)
Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1u2hA00
A:17-112
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_I_set_1u2hA01 (A:20-110)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
1a
I-set-1u2hA01
A:20-110
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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