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1U1O
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(DI)G); A HUMAN TELOMERIC REPEAT CONTAINING INOSINE
Authors
:
J. C. Myers, Y. Shamoo
Date
:
15 Jul 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Dna Complex, Up1, Human Telomeric Repeat, Htr, Tr2- G(11)Di, Rrm, Rna Recognition Motif, Di, Inosine, Hnrnp A1, Transport Protein/Dna Complex
(Keyword Search:
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Reference
:
J. C. Myers, Y. Shamoo
Human Up1 As A Model For Understanding Purine Recognition In The Family Of Proteins Containing The Rna Recognition Motif (Rrm).
J. Mol. Biol. V. 342 743 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014711 (N73S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014711
N
73
S
ROA1_HUMAN
Polymorphism
6533
A
N
73
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:14-97|A:105-184)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
ROA1_HUMAN
14-97
105-184
2
A:14-97
A:105-184
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:8-44)
Exon 1.3 (A:45-93)
Exon 1.4 (A:94-164)
Exon 1.5 (A:164-190)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000340913
1a
ENSE00001482313
chr12:
54674488-54674606
119
ROA1_HUMAN
1-5
5
0
-
-
1.2
ENST00000340913
2
ENSE00000920024
chr12:
54675170-54675286
117
ROA1_HUMAN
6-44
39
1
A:8-44
37
1.3
ENST00000340913
3
ENSE00000920026
chr12:
54675579-54675725
147
ROA1_HUMAN
45-93
49
1
A:45-93
49
1.4
ENST00000340913
4
ENSE00000920027
chr12:
54675874-54676084
211
ROA1_HUMAN
94-164
71
1
A:94-164
71
1.5
ENST00000340913
5
ENSE00000920030
chr12:
54676178-54676270
93
ROA1_HUMAN
164-195
32
1
A:164-190
27
1.6
ENST00000340913
6
ENSE00000920032
chr12:
54676357-54676449
93
ROA1_HUMAN
195-226
32
0
-
-
1.7
ENST00000340913
7
ENSE00000920033
chr12:
54676584-54676658
75
ROA1_HUMAN
226-251
26
0
-
-
1.8a
ENST00000340913
8a
ENSE00001690592
chr12:
54676863-54677018
156
ROA1_HUMAN
251-303
53
0
-
-
1.9a
ENST00000340913
9a
ENSE00001532273
chr12:
54677596-54677751
156
ROA1_HUMAN
303-355
53
0
-
-
1.10
ENST00000340913
10
ENSE00001378946
chr12:
54678042-54678101
60
ROA1_HUMAN
355-372
18
0
-
-
1.11
ENST00000340913
11
ENSE00001532276
chr12:
54678333-54679028
696
ROA1_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1u1oa1 (A:8-98)
1b: SCOP_d1u1oa2 (A:99-190)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Nuclear ribonucleoprotein A1 (RNP A1, UP1)
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1u1oa1
A:8-98
1b
d1u1oa2
A:99-190
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1u1oA01 (A:9-95)
1b: CATH_1u1oA02 (A:100-180)
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)
Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
[unclassified]
(45)
1a
1u1oA01
A:9-95
1b
1u1oA02
A:100-180
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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