PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1U0W
Asym. Unit
Info
Asym.Unit (271 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (135 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
AN ALDOL SWITCH DISCOVERED IN STILBENE SYNTHASES MEDIATES CYCLIZATION SPECIFICITY OF TYPE III POLYKETIDE SYNTHASES: 18XCHS+RESVERATROL STRUCTURE
Authors
:
M. B. Austin, M. E. Bowman, J. -L. Ferrer, J. Schroder, J. P. Noel
Date
:
14 Jul 04 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Type Iii Polyketide Synthase, Pks, Condensing Enzyme, Thiolase Fold, Alpha-Beta-Alpha-Beta-Alpha Fold, Aldol Switch, Catalytic Triad, Engineered Resveratrol Synthase, Rs, Sts, Chs, Chalcone Synthase, Stilbene Synthase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Austin, M. E. Bowman, J. -L. Ferrer, J. Schroder, J. P. Noel
An Aldol Switch Discovered In Stilbene Synthases Mediates Cyclization Specificity Of Type Iii Polyketide Synthases
Chem. Biol. V. 11 1179 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: RESVERATROL (STLa)
1b: RESVERATROL (STLb)
1c: RESVERATROL (STLc)
1d: RESVERATROL (STLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
STL
4
Ligand/Ion
RESVERATROL
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:164 , GLU A:192 , VAL A:193 , THR A:194 , THR A:197 , GLY A:216 , ASP A:217 , ILE A:254 , ASP A:255 , GLY A:256 , THR A:264 , PHE A:265 , ASN A:336 , SER A:338 , PRO A:375
BINDING SITE FOR RESIDUE STL A 2000
2
AC2
SOFTWARE
THR B:132 , GLU B:192 , VAL B:193 , THR B:194 , PHE B:215 , GLY B:216 , ASP B:217 , ILE B:254 , ASP B:255 , GLY B:256 , ASN B:336 , SER B:338 , HOH B:2038 , HOH B:2201
BINDING SITE FOR RESIDUE STL B 2001
3
AC3
SOFTWARE
GLU C:192 , VAL C:193 , THR C:194 , PHE C:215 , GLY C:216 , ASP C:217 , ILE C:254 , ASP C:255 , GLY C:256 , THR C:264 , PHE C:265 , ASN C:336 , SER C:338 , HOH C:2122
BINDING SITE FOR RESIDUE STL C 2002
4
AC4
SOFTWARE
GLU D:192 , VAL D:193 , THR D:194 , PHE D:215 , GLY D:216 , ASP D:217 , ILE D:254 , ASP D:255 , GLY D:256 , LEU D:263 , PHE D:265 , ASN D:336 , SER D:338
BINDING SITE FOR RESIDUE STL D 2003
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CHALCONE_SYNTH (A:156-172,B:156-172,C:156-172,D:15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHALCONE_SYNTH
PS00441
Chalcone and stilbene synthases active site.
CHS2_MEDSA
156-172
4
A:156-172
B:156-172
C:156-172
D:156-172
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1u0wa1 (A:10-234)
1b: SCOP_d1u0wa2 (A:235-389)
1c: SCOP_d1u0wb1 (B:10-234)
1d: SCOP_d1u0wb2 (B:235-389)
1e: SCOP_d1u0wc1 (C:10-234)
1f: SCOP_d1u0wc2 (C:235-389)
1g: SCOP_d1u0wd1 (D:10-234)
1h: SCOP_d1u0wd2 (D:235-389)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Chalcone synthase-like
(56)
Protein domain
:
Chalcone synthase
(16)
Alfalfa (Medicago sativa) [TaxId: 3879]
(16)
1a
d1u0wa1
A:10-234
1b
d1u0wa2
A:235-389
1c
d1u0wb1
B:10-234
1d
d1u0wb2
B:235-389
1e
d1u0wc1
C:10-234
1f
d1u0wc2
C:235-389
1g
d1u0wd1
D:10-234
1h
d1u0wd2
D:235-389
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1u0wA02 (A:236-388)
1b: CATH_1u0wC02 (C:236-388)
1c: CATH_1u0wD02 (D:236-388)
1d: CATH_1u0wA01 (A:3-235)
1e: CATH_1u0wB01 (B:3-235)
1f: CATH_1u0wC01 (C:3-235)
1g: CATH_1u0wD01 (D:3-235)
1h: CATH_1u0wB02 (B:236-388)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Medicago sativa. Organism_taxid: 3879.
(8)
1a
1u0wA02
A:236-388
1b
1u0wC02
C:236-388
1c
1u0wD02
D:236-388
1d
1u0wA01
A:3-235
1e
1u0wB01
B:3-235
1f
1u0wC01
C:3-235
1g
1u0wD01
D:3-235
1h
1u0wB02
B:236-388
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Chal_sti_synt_C_1u0wD01 (D:238-388)
1b: PFAM_Chal_sti_synt_C_1u0wD02 (D:238-388)
1c: PFAM_Chal_sti_synt_C_1u0wD03 (D:238-388)
1d: PFAM_Chal_sti_synt_C_1u0wD04 (D:238-388)
2a: PFAM_Chal_sti_synt_N_1u0wD05 (D:2-228)
2b: PFAM_Chal_sti_synt_N_1u0wD06 (D:2-228)
2c: PFAM_Chal_sti_synt_N_1u0wD07 (D:2-228)
2d: PFAM_Chal_sti_synt_N_1u0wD08 (D:2-228)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Chal_sti_synt_C
(11)
Medicago sativa (Alfalfa)
(3)
1a
Chal_sti_synt_C-1u0wD01
D:238-388
1b
Chal_sti_synt_C-1u0wD02
D:238-388
1c
Chal_sti_synt_C-1u0wD03
D:238-388
1d
Chal_sti_synt_C-1u0wD04
D:238-388
Family
:
Chal_sti_synt_N
(11)
Medicago sativa (Alfalfa)
(3)
2a
Chal_sti_synt_N-1u0wD05
D:2-228
2b
Chal_sti_synt_N-1u0wD06
D:2-228
2c
Chal_sti_synt_N-1u0wD07
D:2-228
2d
Chal_sti_synt_N-1u0wD08
D:2-228
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (271 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1U0W
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help