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1U0A
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
Biol.Unit 5 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ENGINEERED BETA-1,3-1,4-ENDOGLUCANASE H(A16-M) IN COMPLEX WITH BETA-GLUCAN TETRASACCHARIDE
Authors
:
O. J. Gaiser, K. Piotukh, M. N. Ponnuswamy, A. Planas, R. Borriss, U. Hei
Date
:
13 Jul 04 (Deposition) - 06 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
1, 3-1, 4-Beta-Glucanase, Protein-Carbohydrate Interaction, Active- Site Variant, Jellyroll Architecture, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Gaiser, K. Piotukh, M. N. Ponnuswamy, A. Planas, R. Borriss, U. Heinemann
Structural Basis For The Substrate Specificity Of A Bacillu 1, 3-1, 4-Beta-Glucanase
J. Mol. Biol. V. 357 1211 2006
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
1o: BETA-D-GLUCOSE (BGCo)
1p: BETA-D-GLUCOSE (BGCp)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
4
Ligand/Ion
BETA-D-GLUCOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC7 (SOFTWARE)
6: CC2 (SOFTWARE)
7: CC3 (SOFTWARE)
8: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:30 , VAL A:88 , SER A:90 , PHE A:92 , TRP A:103 , GLN A:105 , ASP A:107 , GLN A:109 , ASN A:182 , TRP A:184 , HOH A:2468 , HOH A:3357 , BGC A:4013
BINDING SITE FOR RESIDUE BGC A 4014
2
AC2
SOFTWARE
ASN A:26 , GLU A:63 , TYR A:94 , HOH A:2194 , HOH A:2779 , HOH A:2973 , HOH A:3323 , BGC A:4012 , BGC A:4014
BINDING SITE FOR RESIDUE BGC A 4013
3
AC3
SOFTWARE
TYR A:24 , ASN A:26 , ARG A:65 , HIS A:99 , MET A:180 , HOH A:2722 , HOH A:2779 , HOH A:2854 , HOH A:3150 , BGC A:4011 , BGC A:4013
BINDING SITE FOR RESIDUE BGC A 4012
4
AC4
SOFTWARE
TYR A:24 , ALA A:98 , HOH A:2722 , BGC A:4012
BINDING SITE FOR RESIDUE BGC A 4011
5
BC7
SOFTWARE
TYR A:56 , HOH A:2955 , HOH B:2170 , TYR D:924 , HOH D:2353 , HOH D:2871 , BGC D:4042
BINDING SITE FOR RESIDUE BGC D 4041
6
CC2
SOFTWARE
PRO A:9 , GLY A:45 , ASP A:207 , HOH A:2447 , HOH A:2586 , HOH A:2752
BINDING SITE FOR RESIDUE CA A 5004
7
CC3
SOFTWARE
HIS A:145 , ASP A:161 , HIS C:745 , ASP C:761
BINDING SITE FOR RESIDUE ZN A 5005
8
CC5
SOFTWARE
HIS A:166 , HOH A:3595 , HOH A:3596 , HOH A:6004 , ASP C:791
BINDING SITE FOR RESIDUE ZN A 5011
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GH16_2 (A:6-214)
2: GH16_1 (A:106-115)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH16_2
PS51762
Glycosyl hydrolases family 16 (GH16) domain profile.
GUB_PAEMA
28-237
1
A:6-214
-
-
-
2
GH16_1
PS01034
Glycosyl hydrolases family 16 active sites.
GUB_PAEMA
128-138
1
A:106-115
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u0aa_ (A:)
1b: SCOP_d1u0ab_ (B:)
1c: SCOP_d1u0ac_ (C:)
1d: SCOP_d1u0ad_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 16
(29)
Protein domain
:
Bacillus 1-3,1-4-beta-glucanase
(15)
Paenibacillus macerans [TaxId: 44252]
(1)
1a
d1u0aa_
A:
1b
d1u0ab_
B:
1c
d1u0ac_
C:
1d
d1u0ad_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u0aA00 (A:1-214)
1b: CATH_1u0aB00 (B:301-514)
1c: CATH_1u0aC00 (C:601-814)
1d: CATH_1u0aD00 (D:901-1114)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Paenibacillus macerans. Organism_taxid: 44252.
(3)
1a
1u0aA00
A:1-214
1b
1u0aB00
B:301-514
1c
1u0aC00
C:601-814
1d
1u0aD00
D:901-1114
[
close CATH info
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_16_1u0aD01 (D:926-1110)
1b: PFAM_Glyco_hydro_16_1u0aD02 (D:926-1110)
1c: PFAM_Glyco_hydro_16_1u0aD03 (D:926-1110)
1d: PFAM_Glyco_hydro_16_1u0aD04 (D:926-1110)
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)
(
)
Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_16
(16)
Paenibacillus macerans (Bacillus macerans)
(2)
1a
Glyco_hydro_16-1u0aD01
D:926-1110
1b
Glyco_hydro_16-1u0aD02
D:926-1110
1c
Glyco_hydro_16-1u0aD03
D:926-1110
1d
Glyco_hydro_16-1u0aD04
D:926-1110
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (184 KB)
Header - Asym.Unit
Biol.Unit 1 (47 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
Biol.Unit 5 (176 KB)
Header - Biol.Unit 5
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