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1U0A
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
Biol.Unit 5 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ENGINEERED BETA-1,3-1,4-ENDOGLUCANASE H(A16-M) IN COMPLEX WITH BETA-GLUCAN TETRASACCHARIDE
Authors
:
O. J. Gaiser, K. Piotukh, M. N. Ponnuswamy, A. Planas, R. Borriss, U. Hei
Date
:
13 Jul 04 (Deposition) - 06 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
1, 3-1, 4-Beta-Glucanase, Protein-Carbohydrate Interaction, Active- Site Variant, Jellyroll Architecture, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Gaiser, K. Piotukh, M. N. Ponnuswamy, A. Planas, R. Borriss, U. Heinemann
Structural Basis For The Substrate Specificity Of A Bacillu 1, 3-1, 4-Beta-Glucanase
J. Mol. Biol. V. 357 1211 2006
[
close entry info
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
1o: BETA-D-GLUCOSE (BGCo)
1p: BETA-D-GLUCOSE (BGCp)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
16
Ligand/Ion
BETA-D-GLUCOSE
2
CA
4
Ligand/Ion
CALCIUM ION
3
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:30 , VAL A:88 , SER A:90 , PHE A:92 , TRP A:103 , GLN A:105 , ASP A:107 , GLN A:109 , ASN A:182 , TRP A:184 , HOH A:2468 , HOH A:3357 , BGC A:4013
BINDING SITE FOR RESIDUE BGC A 4014
02
AC2
SOFTWARE
ASN A:26 , GLU A:63 , TYR A:94 , HOH A:2194 , HOH A:2779 , HOH A:2973 , HOH A:3323 , BGC A:4012 , BGC A:4014
BINDING SITE FOR RESIDUE BGC A 4013
03
AC3
SOFTWARE
TYR A:24 , ASN A:26 , ARG A:65 , HIS A:99 , MET A:180 , HOH A:2722 , HOH A:2779 , HOH A:2854 , HOH A:3150 , BGC A:4011 , BGC A:4013
BINDING SITE FOR RESIDUE BGC A 4012
04
AC4
SOFTWARE
TYR A:24 , ALA A:98 , HOH A:2722 , BGC A:4012
BINDING SITE FOR RESIDUE BGC A 4011
05
AC5
SOFTWARE
PHE B:330 , VAL B:388 , SER B:390 , PHE B:392 , TRP B:403 , GLN B:405 , ASP B:407 , GLN B:409 , ASN B:482 , TRP B:484 , HOH B:2656 , HOH B:2866 , BGC B:4023
BINDING SITE FOR RESIDUE BGC B 4024
06
AC6
SOFTWARE
ASN B:326 , GLU B:363 , TYR B:394 , HOH B:2321 , HOH B:2486 , HOH B:2866 , HOH B:3328 , HOH B:3565 , BGC B:4022 , BGC B:4024
BINDING SITE FOR RESIDUE BGC B 4023
07
AC7
SOFTWARE
TYR B:324 , ASN B:326 , ARG B:365 , HIS B:399 , HOH B:2486 , HOH B:2836 , HOH B:3286 , BGC B:4021 , BGC B:4023
BINDING SITE FOR RESIDUE BGC B 4022
08
AC8
SOFTWARE
TYR B:324 , HOH B:2830 , HOH B:2852 , HOH B:2908 , HOH B:3255 , HOH B:3324 , HOH B:3416 , BGC B:4022
BINDING SITE FOR RESIDUE BGC B 4021
09
AC9
SOFTWARE
PHE C:630 , SER C:690 , PHE C:692 , GLN C:705 , ASP C:707 , GLN C:709 , ASN C:782 , TRP C:784 , HOH C:2358 , HOH C:2824 , BGC C:4033
BINDING SITE FOR RESIDUE BGC C 4034
10
BC1
SOFTWARE
ASN C:626 , GLU C:663 , TYR C:694 , HOH C:2303 , HOH C:2504 , HOH C:2824 , HOH C:2963 , BGC C:4032 , BGC C:4034
BINDING SITE FOR RESIDUE BGC C 4033
11
BC2
SOFTWARE
TYR C:624 , ASN C:626 , ARG C:665 , HIS C:699 , MET C:780 , HOH C:2504 , HOH C:3011 , HOH C:3027 , HOH C:3581 , BGC C:4031 , BGC C:4033
BINDING SITE FOR RESIDUE BGC C 4032
12
BC3
SOFTWARE
TYR C:624 , ALA C:698 , HOH C:3581 , BGC C:4032 , GLN D:901
BINDING SITE FOR RESIDUE BGC C 4031
13
BC4
SOFTWARE
PHE D:930 , SER D:990 , PHE D:992 , GLN D:1005 , ASP D:1007 , GLN D:1009 , ASN D:1082 , TRP D:1084 , HOH D:2162 , HOH D:2844 , HOH D:2979 , BGC D:4043
BINDING SITE FOR RESIDUE BGC D 4044
14
BC5
SOFTWARE
ASN D:926 , GLU D:963 , TYR D:994 , HOH D:2081 , HOH D:2438 , HOH D:2616 , HOH D:2844 , BGC D:4042 , BGC D:4044
BINDING SITE FOR RESIDUE BGC D 4043
15
BC6
SOFTWARE
TYR D:924 , ASN D:926 , ARG D:965 , HIS D:999 , MET D:1080 , HOH D:2616 , HOH D:2999 , HOH D:3019 , HOH D:3382 , BGC D:4041 , BGC D:4043
BINDING SITE FOR RESIDUE BGC D 4042
16
BC7
SOFTWARE
TYR A:56 , HOH A:2955 , HOH B:2170 , TYR D:924 , HOH D:2353 , HOH D:2871 , BGC D:4042
BINDING SITE FOR RESIDUE BGC D 4041
17
BC8
SOFTWARE
PRO D:909 , GLY D:945 , ASP D:1107 , HOH D:2022 , HOH D:2816 , HOH D:2817
BINDING SITE FOR RESIDUE CA D 5001
18
BC9
SOFTWARE
PRO B:309 , GLY B:345 , ASP B:507 , HOH B:2114 , HOH B:2812 , HOH B:2813
BINDING SITE FOR RESIDUE CA B 5002
19
CC1
SOFTWARE
PRO C:609 , GLY C:645 , ASP C:807 , HOH C:2242 , HOH C:2315 , HOH C:2815
BINDING SITE FOR RESIDUE CA C 5003
20
CC2
SOFTWARE
PRO A:9 , GLY A:45 , ASP A:207 , HOH A:2447 , HOH A:2586 , HOH A:2752
BINDING SITE FOR RESIDUE CA A 5004
21
CC3
SOFTWARE
HIS A:145 , ASP A:161 , HIS C:745 , ASP C:761
BINDING SITE FOR RESIDUE ZN A 5005
22
CC4
SOFTWARE
HIS B:445 , ASP B:461 , HIS D:1045 , ASP D:1061
BINDING SITE FOR RESIDUE ZN B 5006
23
CC5
SOFTWARE
HIS A:166 , HOH A:3595 , HOH A:3596 , HOH A:6004 , ASP C:791
BINDING SITE FOR RESIDUE ZN A 5011
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GH16_2 (A:6-214,B:306-514,C:606-814,D:906-...)
2: GH16_1 (A:106-115,B:406-415,C:706-715,D:10...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH16_2
PS51762
Glycosyl hydrolases family 16 (GH16) domain profile.
GUB_PAEMA
28-237
4
A:6-214
B:306-514
C:606-814
D:906-1114
2
GH16_1
PS01034
Glycosyl hydrolases family 16 active sites.
GUB_PAEMA
128-138
4
A:106-115
B:406-415
C:706-715
D:1006-1015
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1u0aa_ (A:)
1b: SCOP_d1u0ab_ (B:)
1c: SCOP_d1u0ac_ (C:)
1d: SCOP_d1u0ad_ (D:)
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 16
(29)
Protein domain
:
Bacillus 1-3,1-4-beta-glucanase
(15)
Paenibacillus macerans [TaxId: 44252]
(1)
1a
d1u0aa_
A:
1b
d1u0ab_
B:
1c
d1u0ac_
C:
1d
d1u0ad_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1u0aA00 (A:1-214)
1b: CATH_1u0aB00 (B:301-514)
1c: CATH_1u0aC00 (C:601-814)
1d: CATH_1u0aD00 (D:901-1114)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Paenibacillus macerans. Organism_taxid: 44252.
(3)
1a
1u0aA00
A:1-214
1b
1u0aB00
B:301-514
1c
1u0aC00
C:601-814
1d
1u0aD00
D:901-1114
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_16_1u0aD01 (D:926-1110)
1b: PFAM_Glyco_hydro_16_1u0aD02 (D:926-1110)
1c: PFAM_Glyco_hydro_16_1u0aD03 (D:926-1110)
1d: PFAM_Glyco_hydro_16_1u0aD04 (D:926-1110)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_16
(16)
Paenibacillus macerans (Bacillus macerans)
(2)
1a
Glyco_hydro_16-1u0aD01
D:926-1110
1b
Glyco_hydro_16-1u0aD02
D:926-1110
1c
Glyco_hydro_16-1u0aD03
D:926-1110
1d
Glyco_hydro_16-1u0aD04
D:926-1110
[
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]
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Asym.Unit (184 KB)
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