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1TZP
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
MEPA, INACTIVE FORM WITHOUT ZN IN P21
Authors
:
M. Marcyjaniak, S. G. Odintsov, I. Sabala, M. Bochtler
Date
:
11 Jul 04 (Deposition) - 07 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Las Enzyme, Metallopeptidase, Peptidoglycan Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marcyjaniak, S. G. Odintsov, I. Sabala, M. Bochtler
Peptidoglycan Amidase Mepa Is A Las Metallopeptidase
J. Biol. Chem. V. 279 43982 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,4-BUTANEDIOL (BU1a)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BU1
1
Ligand/Ion
1,4-BUTANEDIOL
2
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:205 , HIS A:206 , ARG A:207 , ALA A:208 , HIS A:209 , HOH A:695
BINDING SITE FOR RESIDUE SO4 A 561
02
AC2
SOFTWARE
GLN B:205 , HIS B:206 , ARG B:207 , ALA B:208 , HIS B:209 , HOH B:603 , HOH B:662 , HOH B:718
BINDING SITE FOR RESIDUE SO4 B 562
03
AC3
SOFTWARE
ASN A:179 , PHE A:204 , GLN A:205 , ARG A:207 , HOH A:716
BINDING SITE FOR RESIDUE SO4 A 563
04
AC4
SOFTWARE
LYS A:149 , HIS B:150 , VAL B:151 , VAL B:152 , SER B:153 , HOH B:741 , HOH B:805
BINDING SITE FOR RESIDUE SO4 B 564
05
AC5
SOFTWARE
LEU A:136 , ARG A:137 , PRO A:230 , SER A:231 , HOH A:641
BINDING SITE FOR RESIDUE SO4 A 565
06
AC6
SOFTWARE
SER B:55 , GLU B:56 , HIS B:57 , BU1 B:570 , HOH B:670 , HOH B:726 , HOH B:733
BINDING SITE FOR RESIDUE SO4 B 566
07
AC7
SOFTWARE
ARG B:175 , ARG B:201 , PRO B:229 , HOH B:725
BINDING SITE FOR RESIDUE SO4 B 567
08
AC8
SOFTWARE
ARG A:175 , ARG A:201 , HOH A:732
BINDING SITE FOR RESIDUE SO4 A 568
09
AC9
SOFTWARE
ASN B:179 , PHE B:204 , GLN B:205 , ARG B:207
BINDING SITE FOR RESIDUE SO4 B 569
10
BC1
SOFTWARE
HIS A:150 , GLU B:56 , LYS B:149 , PHE B:243 , GLU B:244 , SO4 B:566
BINDING SITE FOR RESIDUE BU1 B 570
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tzpa_ (A:)
1b: SCOP_d1tzpb_ (B:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
MepA-like
(2)
Protein domain
:
D-alanyl-D-alanine-endopeptidase MepA
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1tzpa_
A:
1b
d1tzpb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tzpB00 (B:23-272)
1b: CATH_1tzpA00 (A:20-274)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1tzpB00
B:23-272
1b
1tzpA00
A:20-274
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M74_1tzpB01 (B:35-272)
1b: PFAM_Peptidase_M74_1tzpB02 (B:35-272)
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Clan
:
Peptidase_MD
(20)
Family
:
Peptidase_M74
(2)
Escherichia coli (strain K12)
(2)
1a
Peptidase_M74-1tzpB01
B:35-272
1b
Peptidase_M74-1tzpB02
B:35-272
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Asymmetric Unit 1
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