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1TZJ
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE COMPLEXED WITH D-VINYL GLYCINE
Authors
:
S. Karthikeyan, Q. Zhou, Z. Zhao, C. L. Kao, Z. Tao, H. Robinson, H. W. Liu
Date
:
10 Jul 04 (Deposition) - 02 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Accd, Substrate, Plp, Crystal, Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karthikeyan, Q. Zhou, Z. Zhao, C. L. Kao, Z. Tao, H. Robinson, H. W. Liu, H. Zhang
Structural Analysis Of Pseudomonas 1-Aminocyclopropane-1-Carboxylate Deaminase Complexes: Insight Into The Mechanism Of A Unique Pyridoxal-5'-Phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry V. 43 13328 2004
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: D-VINYLGLYCINE (A3Ba)
1b: D-VINYLGLYCINE (A3Bb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3B
2
Ligand/Ion
D-VINYLGLYCINE
2
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:78 , ASN B:79 , GLN B:80 , TYR B:268 , TYR B:294 , PLP B:401 , HOH B:938
BINDING SITE FOR RESIDUE SO4 B 601
2
AC2
SOFTWARE
LYS D:51 , SER D:78 , ASN D:79 , GLN D:80 , TYR D:294 , PLP D:401 , HOH D:937 , HOH D:995
BINDING SITE FOR RESIDUE SO4 D 602
3
AC3
SOFTWARE
ASN A:50 , LYS A:51 , LYS A:54 , ASN A:79 , SER A:163 , CYS A:196 , SER A:197 , VAL A:198 , THR A:199 , GLY A:200 , SER A:201 , THR A:202 , TYR A:294 , GLU A:295 , LEU A:322 , GLY A:323 , GLY A:324 , A3B A:501 , HOH A:782 , HOH A:846
BINDING SITE FOR RESIDUE PLP A 401
4
AC4
SOFTWARE
ASN B:50 , LYS B:51 , LYS B:54 , ASN B:79 , CYS B:196 , SER B:197 , VAL B:198 , THR B:199 , GLY B:200 , SER B:201 , THR B:202 , TYR B:294 , GLU B:295 , LEU B:322 , GLY B:323 , GLY B:324 , SO4 B:601 , HOH B:764 , HOH B:826
BINDING SITE FOR RESIDUE PLP B 401
5
AC5
SOFTWARE
ASN C:50 , LYS C:51 , LYS C:54 , ASN C:79 , CYS C:196 , SER C:197 , VAL C:198 , THR C:199 , GLY C:200 , SER C:201 , THR C:202 , TYR C:294 , GLU C:295 , LEU C:322 , GLY C:323 , GLY C:324 , A3B C:502 , HOH C:708 , HOH C:736
BINDING SITE FOR RESIDUE PLP C 401
6
AC6
SOFTWARE
ASN D:50 , LYS D:51 , LYS D:54 , ASN D:79 , CYS D:196 , SER D:197 , VAL D:198 , THR D:199 , GLY D:200 , SER D:201 , THR D:202 , TYR D:294 , GLU D:295 , LEU D:322 , GLY D:323 , GLY D:324 , SO4 D:602 , HOH D:723 , HOH D:757
BINDING SITE FOR RESIDUE PLP D 401
7
AC7
SOFTWARE
LYS A:51 , ILE A:73 , SER A:78 , ASN A:79 , GLN A:80 , ALA A:160 , GLY A:161 , TYR A:294 , PLP A:401 , HOH A:1044
BINDING SITE FOR RESIDUE A3B A 501
8
AC8
SOFTWARE
LYS C:51 , GLY C:74 , GLY C:75 , SER C:78 , ASN C:79 , GLN C:80 , TYR C:294 , PLP C:401 , HOH C:936 , HOH C:1075 , HOH C:1170
BINDING SITE FOR RESIDUE A3B C 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1tzja_ (A:)
1b: SCOP_d1tzjb_ (B:)
1c: SCOP_d1tzjc_ (C:)
1d: SCOP_d1tzjd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
1-aminocyclopropane-1-carboxylate deaminase
(12)
Pseudomonas sp., strain ACP [TaxId: 306]
(6)
1a
d1tzja_
A:
1b
d1tzjb_
B:
1c
d1tzjc_
C:
1d
d1tzjd_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1tzjA01 (A:1-45,A:165-338)
1b: CATH_1tzjB01 (B:1-45,B:165-338)
1c: CATH_1tzjC02 (C:66-164)
1d: CATH_1tzjA02 (A:66-164)
1e: CATH_1tzjC01 (C:1-45,C:165-338)
1f: CATH_1tzjD02 (D:66-164)
1g: CATH_1tzjB02 (B:66-164)
1h: CATH_1tzjD01 (D:1-45,D:165-338)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Acp (Pseudomonas sp)
(6)
1a
1tzjA01
A:1-45,A:165-338
1b
1tzjB01
B:1-45,B:165-338
1c
1tzjC02
C:66-164
1d
1tzjA02
A:66-164
1e
1tzjC01
C:1-45,C:165-338
1f
1tzjD02
D:66-164
1g
1tzjB02
B:66-164
1h
1tzjD01
D:1-45,D:165-338
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PALP_1tzjD01 (D:10-323)
1b: PFAM_PALP_1tzjD02 (D:10-323)
1c: PFAM_PALP_1tzjD03 (D:10-323)
1d: PFAM_PALP_1tzjD04 (D:10-323)
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)
Clan
:
no clan defined [family: PALP]
(67)
Family
:
PALP
(67)
Pseudomonas sp. (strain ACP)
(6)
1a
PALP-1tzjD01
D:10-323
1b
PALP-1tzjD02
D:10-323
1c
PALP-1tzjD03
D:10-323
1d
PALP-1tzjD04
D:10-323
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Asym.Unit (222 KB)
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