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1TZG
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 NEUTRALIZING HUMAN FAB 4E10 IN COMPLEX WITH A 13-RESIDUE PEPTIDE CONTAINING THE 4E10 EPITOPE ON GP41
Authors
:
R. M. F. Cardoso, M. B. Zwick, R. L. Stanfield, R. Kunert, J. M. Binley, H. D. R. Burton, I. A. Wilson
Date
:
09 Jul 04 (Deposition) - 01 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : H,I,L,M,P,Q
Biol. Unit 1: H,L,P (1x)
Biol. Unit 2: I,M,Q (1x)
Biol. Unit 3: H,I,L,M,P,Q (1x)
Keywords
:
Antibody-Epitope Complex, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. M. F. Cardoso, M. B. Zwick, R. L. Stanfield, R. Kunert, J. M. Binley, H. Katinger, D. R. Burton, I. A. Wilson
Broadly Neutralizing Anti-Hiv Antibody 4E10 Recognizes A Helical Conformation Of A Highly Conserved Fusion-Associate Motif In Gp41
Immunity V. 22 163 2005
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
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No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE H:174 , PRO H:175 , VAL H:177 , SER H:186 , LEU H:187 , SER H:188 , SER L:162 , SER L:176 , SER L:177 , THR L:178 , HOH L:774
BINDING SITE FOR RESIDUE GOL L 701
2
AC2
SOFTWARE
GLY H:164 , ARG L:61 , GLU L:81 , HOH L:770 , HOH L:813
BINDING SITE FOR RESIDUE GOL L 702
3
AC3
SOFTWARE
PRO H:214 , PRO L:8 , GLY L:9 , THR L:10 , HOH L:761
BINDING SITE FOR RESIDUE GOL L 703
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1tzgl1 (L:1-106)
1b: SCOP_d1tzgm1 (M:1-106)
2a: SCOP_d1tzgl2 (L:107-213)
2b: SCOP_d1tzgm2 (M:107-213)
3a: SCOP_d1tzgh2 (H:114-232)
3b: SCOP_d1tzgi2 (I:114-228)
4a: SCOP_d1tzgh1 (H:1-113)
4b: SCOP_d1tzgi1 (I:1-113)
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Organisms
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Class
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All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d1tzgl1
L:1-106
1b
d1tzgm1
M:1-106
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d1tzgl2
L:107-213
2b
d1tzgm2
M:107-213
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
3a
d1tzgh2
H:114-232
3b
d1tzgi2
I:114-228
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(37)
4a
d1tzgh1
H:1-113
4b
d1tzgi1
I:1-113
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1tzgL02 (L:109-211)
1b: CATH_1tzgL01 (L:1-108)
1c: CATH_1tzgM01 (M:1-108)
1d: CATH_1tzgI02 (I:110-228)
1e: CATH_1tzgH02 (H:110-232)
1f: CATH_1tzgH01 (H:1-109)
1g: CATH_1tzgI01 (I:1-109)
1h: CATH_1tzgM02 (M:109-211)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1tzgL02
L:109-211
1b
1tzgL01
L:1-108
1c
1tzgM01
M:1-108
1d
1tzgI02
I:110-228
1e
1tzgH02
H:110-232
1f
1tzgH01
H:1-109
1g
1tzgI01
I:1-109
1h
1tzgM02
M:109-211
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (153 KB)
Header - Biol.Unit 3
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