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(1)
Title
:
CRYSTAL STRUCTURE OF THE VPS9 DOMAIN OF RABEX-5
Authors
:
A. Delprato, E. Merithew, D. G. Lambright
Date
:
06 Jul 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Vps9 Domain, Rab5 Guanine-Nucleotide Exchange Factor, Gef, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Delprato, E. Merithew, D. G. Lambright
Structure, Exchange Determinants, And Family-Wide Rab Specificity Of The Tandem Helical Bundle And Vps9 Domains Of Rabex-5
Cell(Cambridge, Mass. ) V. 118 607 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
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No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:274 , HIS A:297
BINDING SITE FOR RESIDUE MG A 1
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: VPS9 (A:232-375)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VPS9
PS51205
VPS9 domain profile.
RABX5_HUMAN
449-592
1
A:232-375
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1txua_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
VPS9 domain
(2)
Superfamily
:
VPS9 domain
(2)
Family
:
VPS9 domain
(2)
Protein domain
:
Rab5 GDP/GTP exchange factor (Rabex-5)
(1)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(1)
1a
d1txua_
A:
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CATH Domains
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Pfam Domains
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all PFAM domains
1a: PFAM_VPS9_1txuA01 (A:268-371)
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Clan
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no clan defined [family: VPS9]
(2)
Family
:
VPS9
(2)
Homo sapiens (Human)
(2)
1a
VPS9-1txuA01
A:268-371
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