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1TXG
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS
Authors
:
S. Sakasegawa, C. H. Hagemeier, R. K. Thauer, L. O. Essen, S. Shima
Date
:
05 Jul 04 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Sakasegawa, C. H. Hagemeier, R. K. Thauer, L. O. Essen, S. Shima
Structural And Functional Analysis Of The Gpsa Gene Product Of Archaeoglobus Fulgidus: A Glycerol-3-Phosphate Dehydrogenase With An Unusual Nadp+ Preference
Protein Sci. V. 13 3161 2004
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: AMMONIUM ION (NH4a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NH4
1
Ligand/Ion
AMMONIUM ION
3
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:147 , HOH B:1175 , HOH B:1292
BINDING SITE FOR RESIDUE SO4 B 1001
02
AC2
SOFTWARE
LYS A:53 , ASN A:55 , HOH A:1070 , HOH A:1126
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
LYS A:105 , LYS A:192 , ASN A:193 , HOH A:1078 , HOH A:1239
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
ARG A:256 , GLY A:257 , GLY A:258 , HOH A:1052 , HOH A:1159
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
ARG A:203 , ARG A:256 , GOL A:1009 , HOH A:1067 , HOH A:1158 , HOH A:1334
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
ARG B:256 , GLY B:257 , GLY B:258 , HOH B:1065 , HOH B:1197 , HOH B:1201 , HOH B:1243
BINDING SITE FOR RESIDUE SO4 B 1006
07
AC7
SOFTWARE
LYS B:105 , LYS B:192 , ASN B:193 , HOH B:1120 , HOH B:1145 , HOH B:1280
BINDING SITE FOR RESIDUE SO4 B 1007
08
AC8
SOFTWARE
GLY B:258 , ARG B:259 , HOH B:1341
BINDING SITE FOR RESIDUE SO4 B 1008
09
AC9
SOFTWARE
LEU B:115 , THR B:116 , GLU B:119 , HOH B:1114 , HOH B:1381 , HOH B:1382
BINDING SITE FOR RESIDUE NH4 B 1011
10
BC1
SOFTWARE
ALA A:200 , ARG A:203 , LYS A:217 , PHE A:255 , SO4 A:1005 , HOH A:1020 , HOH A:1031 , HOH A:1112
BINDING SITE FOR RESIDUE GOL A 1009
11
BC2
SOFTWARE
ALA B:200 , ARG B:203 , LYS B:217 , PHE B:255 , HOH B:1022 , HOH B:1059 , HOH B:1248
BINDING SITE FOR RESIDUE GOL B 1010
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1txga1 (A:181-335)
1b: SCOP_d1txgb1 (B:181-335)
2a: SCOP_d1txga2 (A:1-180)
2b: SCOP_d1txgb2 (B:1-180)
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Classes
(
)
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Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Glycerol-3-phosphate dehydrogenase
(8)
Protein domain
:
Glycerol-3-phosphate dehydrogenase
(8)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
1a
d1txga1
A:181-335
1b
d1txgb1
B:181-335
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Glycerol-3- phosphate dehydrogenase
(8)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
2a
d1txga2
A:1-180
2b
d1txgb2
B:1-180
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1txgA01 (A:1-180)
1b: CATH_1txgB01 (B:1-180)
2a: CATH_1txgA02 (A:181-335)
2b: CATH_1txgB02 (B:181-335)
View:
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(2)
1a
1txgA01
A:1-180
1b
1txgB01
B:1-180
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(1)
2a
1txgA02
A:181-335
2b
1txgB02
B:181-335
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NAD_Gly3P_dh_C_1txgB01 (B:180-331)
1b: PFAM_NAD_Gly3P_dh_C_1txgB02 (B:180-331)
2a: PFAM_NAD_Gly3P_dh_N_1txgB03 (B:2-162)
2b: PFAM_NAD_Gly3P_dh_N_1txgB04 (B:2-162)
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Clans
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
6PGD_C
(47)
Family
:
NAD_Gly3P_dh_C
(11)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
1a
NAD_Gly3P_dh_C-1txgB01
B:180-331
1b
NAD_Gly3P_dh_C-1txgB02
B:180-331
Clan
:
NADP_Rossmann
(1239)
Family
:
NAD_Gly3P_dh_N
(11)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
2a
NAD_Gly3P_dh_N-1txgB03
B:2-162
2b
NAD_Gly3P_dh_N-1txgB04
B:2-162
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