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Theor. Model
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Theoretical Model (129 KB)
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(1)
Title
:
MOLECULAR ANALYSIS OF INTERACTION BETWEEN ANTHRAX TOXIN RECEPTOR AND PROTECTIVE ANTIGEN
Authors
:
J. Pandey, D. Warburton
Date
:
01 Jul 04 (Deposition) - 22 Nov 05 (Release) - 22 Nov 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,C,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Protective Antigen; Anthrax Toxin Receptor; Soft Docking; Bigger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Pandey, D. Warburton
Molecular Analysis Of Interaction Between Anthrax Toxin Receptor And Protective Antigen
To Be Published 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
2
Ligand/Ion
CALCIUM ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022687 (L45P, chain A, )
2: VAR_022688 (G105D, chain A, )
3: VAR_022689 (I189T, chain A, )
4: VAR_PAG_BACAN_001 (M266I, chain C, )
5: VAR_PAG_BACAN_002 (N363D, chain C, )
6: VAR_PAG_BACAN_003 (F531L, chain C, )
7: VAR_PAG_BACAN_004 (P536S, chain C, )
8: VAR_PAG_BACAN_005 (A571V, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022687
L
45
P
ANTR2_HUMAN
Disease (HFS)
---
A
L
45
P
2
UniProt
VAR_022688
G
105
D
ANTR2_HUMAN
Disease (HFS)
---
A
G
105
D
3
UniProt
VAR_022689
I
189
T
ANTR2_HUMAN
Disease (HFS)
---
A
I
189
T
4
UniProt
VAR_PAG_BACAN_001
*
M
295
I
PAG_BACAN
---
---
C
M
266
I
5
UniProt
VAR_PAG_BACAN_002
*
N
392
D
PAG_BACAN
---
---
C
N
363
D
6
UniProt
VAR_PAG_BACAN_003
*
F
560
L
PAG_BACAN
---
---
C
F
531
L
7
UniProt
VAR_PAG_BACAN_004
*
P
565
S
PAG_BACAN
---
---
C
P
536
S
8
UniProt
VAR_PAG_BACAN_005
*
A
600
V
PAG_BACAN
---
---
C
A
571
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PA14 (C:14-150)
2: VWFA (A:44-213)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA14
PS51820
PA14 domain profile.
PAG_BACAN
43-179
1
C:14-150
2
VWFA
PS50234
VWFA domain profile.
ANTR2_HUMAN
44-213
1
A:44-213
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.8d (A:41-51)
Exon 1.9a (A:51-75)
Exon 1.10 (A:75-99)
Exon 1.11 (A:99-126)
Exon 1.12 (A:127-162)
Exon 1.13 (A:163-185)
Exon 1.14b (A:186-212)
Exon 1.15 (A:213-217)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.8d
2: Boundary 1.8d/1.9a
3: Boundary 1.9a/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
6: Boundary 1.12/1.13
7: Boundary 1.13/1.14b
8: Boundary 1.14b/1.15
9: Boundary 1.15/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.8d
ENST00000307333
8d
ENSE00001871464
chr4:
80993717-80993563
155
ANTR2_HUMAN
1-51
51
1
A:41-51
11
1.9a
ENST00000307333
9a
ENSE00001761580
chr4:
80992808-80992737
72
ANTR2_HUMAN
51-75
25
1
A:51-75
25
1.10
ENST00000307333
10
ENSE00001798474
chr4:
80990661-80990590
72
ANTR2_HUMAN
75-99
25
1
A:75-99
25
1.11
ENST00000307333
11
ENSE00001123454
chr4:
80977167-80977086
82
ANTR2_HUMAN
99-126
28
1
A:99-126
28
1.12
ENST00000307333
12
ENSE00001123446
chr4:
80976621-80976514
108
ANTR2_HUMAN
127-162
36
1
A:127-162
36
1.13
ENST00000307333
13
ENSE00001123438
chr4:
80976372-80976304
69
ANTR2_HUMAN
163-185
23
1
A:163-185
23
1.14b
ENST00000307333
14b
ENSE00001123430
chr4:
80975506-80975426
81
ANTR2_HUMAN
186-212
27
1
A:186-212
27
1.15
ENST00000307333
15
ENSE00001123421
chr4:
80957186-80957126
61
ANTR2_HUMAN
213-233
21
1
A:213-217
5
1.16
ENST00000307333
16
ENSE00001123410
chr4:
80954724-80954626
99
ANTR2_HUMAN
233-266
34
0
-
-
1.17
ENST00000307333
17
ENSE00001123400
chr4:
80952846-80952777
70
ANTR2_HUMAN
266-289
24
0
-
-
1.19
ENST00000307333
19
ENSE00001712373
chr4:
80940130-80940052
79
ANTR2_HUMAN
289-315
27
0
-
-
1.20
ENST00000307333
20
ENSE00001665059
chr4:
80929770-80929675
96
ANTR2_HUMAN
316-347
32
0
-
-
1.21
ENST00000307333
21
ENSE00001771910
chr4:
80906017-80905973
45
ANTR2_HUMAN
348-362
15
0
-
-
1.22
ENST00000307333
22
ENSE00001710470
chr4:
80905124-80905032
93
ANTR2_HUMAN
363-393
31
0
-
-
1.23
ENST00000307333
23
ENSE00001599114
chr4:
80899328-80899161
168
ANTR2_HUMAN
394-449
56
0
-
-
1.24b
ENST00000307333
24b
ENSE00001257764
chr4:
80898855-80898733
123
ANTR2_HUMAN
450-489
40
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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