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1TWT
Theor. Model
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Theoretical Model (935 KB)
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Title
:
MODEL STRUCTURE OF THE T. THERMOPHILUS 70S RIBOSOME, 30S SUBUNIT OF 70S ROBOSOME. THIS FILE, 1TWT, CONTAINS ONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT IS IN THE PDB FILE 1TWV.
Authors
:
C. S. Tung, K. Y. Sanbonmatsu
Date
:
01 Jul 04 (Deposition) - 26 Oct 04 (Release) - 26 Oct 04 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Keywords
:
Ribosome, Rna, Model, 70S
(Keyword Search:
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Reference
:
C. S. Tung, K. Y. Sanbonmatsu
Atomic Model Of The Thermus Thermophilus 70S Ribosome Developed In Silico.
Biophys. J. V. 87 2714 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RS12_THETH_001 (P45S, chain O, )
2: VAR_RS12_THETH_002 (K46R, chain O, )
3: VAR_RS12_THETH_003 (R89C, chain O, )
4: VAR_RS12_THETH_004 (R89H, chain O, )
5: VAR_RS12_THETH_005 (K91E, chain O, )
6: VAR_RS12_THETH_006 (K91R, chain O, )
7: VAR_RS12_THETH_007 (P94L, chain O, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RS12_THETH_001
*
P
42
S
RS12_THETH
---
---
O
P
45
S
2
UniProt
VAR_RS12_THETH_002
*
K
43
R
RS12_THETH
---
---
O
K
46
R
3
UniProt
VAR_RS12_THETH_003
*
R
86
C
RS12_THETH
---
---
O
R
89
C
4
UniProt
VAR_RS12_THETH_004
*
R
86
H
RS12_THETH
---
---
O
R
89
H
5
UniProt
VAR_RS12_THETH_005
*
K
88
E
RS12_THETH
---
---
O
K
91
E
6
UniProt
VAR_RS12_THETH_006
*
K
88
R
RS12_THETH
---
---
O
K
91
R
7
UniProt
VAR_RS12_THETH_007
*
P
91
L
RS12_THETH
---
---
O
P
94
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(15, 15)
Info
All PROSITE Patterns/Profiles
01: S5_DSRBD (H:6-69)
02: RIBOSOMAL_S7 (J:20-46)
03: RIBOSOMAL_S14 (Q:23-45)
04: RIBOSOMAL_S5 (H:23-55)
05: RIBOSOMAL_S10 (M:27-42)
06: RIBOSOMAL_S18 (U:32-55)
07: RIBOSOMAL_S15 (R:39-69)
08: RIBOSOMAL_S12 (O:46-53)
09: RIBOSOMAL_S6 (I:44-53)
10: RIBOSOMAL_S19 (V:53-77)
11: RIBOSOMAL_S17 (T:54-66)
12: RIBOSOMAL_S9 (L:67-85)
13: RIBOSOMAL_S4 (G:97-121)
14: S4 (G:99-161)
15: RIBOSOMAL_S8 (K:108-125)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
S5_DSRBD
PS50881
S5 double stranded RNA-binding domain profile.
RS5_THETH
6-69
1
H:6-69
2
RIBOSOMAL_S7
PS00052
Ribosomal protein S7 signature.
RS7_THET8
20-46
1
J:20-46
3
RIBOSOMAL_S14
PS00527
Ribosomal protein S14 signature.
RS14Z_THETH
23-45
1
Q:23-45
4
RIBOSOMAL_S5
PS00585
Ribosomal protein S5 signature.
RS5_THETH
23-55
1
H:23-55
5
RIBOSOMAL_S10
PS00361
Ribosomal protein S10 signature.
RS10_THETH
27-42
1
M:27-42
6
RIBOSOMAL_S18
PS00057
Ribosomal protein S18 signature.
RS18_THETH
32-55
1
U:32-55
7
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_THETH
39-69
1
R:39-69
8
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS12_THETH
43-50
1
O:46-53
9
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_THETH
44-53
1
I:44-53
10
RIBOSOMAL_S19
PS00323
Ribosomal protein S19 signature.
RS19_THETH
53-77
1
V:53-77
11
RIBOSOMAL_S17
PS00056
Ribosomal protein S17 signature.
RS17_THETH
54-66
1
T:54-66
12
RIBOSOMAL_S9
PS00360
Ribosomal protein S9 signature.
RS9_THET2
67-85
1
L:67-85
13
RIBOSOMAL_S4
PS00632
Ribosomal protein S4 signature.
RS4_THET8
97-121
1
G:97-121
14
S4
PS50889
S4 RNA-binding domain profile.
RS4_THET8
99-161
1
G:99-161
15
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS8_THETH
108-125
1
K:108-125
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