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1TVG
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN PP25 GENE PRODUCT, HSPC034. NORTHEAST STRUCTURAL GENOMICS TARGET HR1958.
Authors
:
A. P. Kuzin, S. M. Vorobiev, I. Lee, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date
:
29 Jun 04 (Deposition) - 09 Nov 04 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Cycle, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. A. Ramelot, S. Raman, A. P. Kuzin, R. Xiao, L. C. Ma, T. B. Acton, J. F. Hunt, G. T. Montelione, D. Baker, M. A. Kennedy
Improving Nmr Protein Structure Quality By Rosetta Refinement: A Molecular Replacement Study.
Proteins V. 75 147 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: SAMARIUM (III) ION (SMa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
SM
1
Ligand/Ion
SAMARIUM (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:29 , ASP A:32 , ASN A:34 , THR A:37 , HIS A:130 , HOH A:334
BINDING SITE FOR RESIDUE CA A 221
2
AC2
SOFTWARE
ASP A:92
BINDING SITE FOR RESIDUE SM A 331
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
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Exons
(5, 5)
Info
All Exons
Exon 1.3b (A:4-33)
Exon 1.4a (A:33-69)
Exon 1.5b (A:69-92)
Exon 1.6a (A:92-106)
Exon 1.7c (A:107-140 (gaps))
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1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.5b
4: Boundary 1.5b/1.6a
5: Boundary 1.6a/1.7c
6: Boundary 1.7c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000194214
2a
ENSE00001841796
chr1:
54411602-54411228
375
IFT25_HUMAN
-
0
0
-
-
1.3b
ENST00000194214
3b
ENSE00001334213
chr1:
54405770-54405658
113
IFT25_HUMAN
1-33
33
1
A:4-33
30
1.4a
ENST00000194214
4a
ENSE00000772733
chr1:
54395818-54395712
107
IFT25_HUMAN
33-69
37
1
A:33-69
37
1.5b
ENST00000194214
5b
ENSE00001242678
chr1:
54394113-54394045
69
IFT25_HUMAN
69-92
24
1
A:69-92
24
1.6a
ENST00000194214
6a
ENSE00001242673
chr1:
54389620-54389577
44
IFT25_HUMAN
92-106
15
1
A:92-106
15
1.7c
ENST00000194214
7c
ENSE00001455098
chr1:
54387440-54387234
207
IFT25_HUMAN
107-144
38
1
A:107-140 (gaps)
34
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1tvga_ (A:)
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(
)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
APC10-like
(4)
Protein domain
:
Placental protein 25, pp25
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1tvga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1tvgA00 (A:4-140)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
1tvgA00
A:4-140
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (29 KB)
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