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1TV5
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (198 KB)
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(1)
Title
:
PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE WITH A BOUND INHIBITOR
Authors
:
D. E. Hurt, J. Widom, J. Clardy
Date
:
27 Jun 04 (Deposition) - 06 Sep 05 (Release) - 18 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Keywords
:
Alpha-Beta Barrel; Tim Barrel, Oxidoreductase
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Reference
:
D. E. Hurt, J. Widom, J. Clardy
Structure Of Plasmodium Falciparum Dihydroorotate Dehydrogenase With A Bound Inhibitor.
Acta Crystallogr. , Sect. D V. 62 312 2006
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: (2Z)-2-CYANO-3-HYDROXY-N-[4-(TRIFL... (A26a)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
3a: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL (N8Ea)
3b: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL (N8Eb)
4a: OROTIC ACID (OROa)
5a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A26
1
Ligand/Ion
(2Z)-2-CYANO-3-HYDROXY-N-[4-(TRIFLUOROMETHYL)PHENYL]BUT-2-ENAMIDE
2
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
N8E
2
Ligand/Ion
3,6,9,12,15-PENTAOXATRICOSAN-1-OL
4
ORO
1
Ligand/Ion
OROTIC ACID
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:193 , TYR A:194
BINDING SITE FOR RESIDUE SO4 A 1006
2
AC2
SOFTWARE
PHE A:171 , LEU A:172 , GLY A:181 , CYS A:184 , HIS A:185 , PHE A:188 , ILE A:263 , ARG A:265 , TYR A:528 , VAL A:532 , GLY A:535 , MET A:536
BINDING SITE FOR RESIDUE A26 A 1001
3
AC3
SOFTWARE
ALA A:224 , ALA A:225 , GLY A:226 , LYS A:229 , GLY A:248 , THR A:249 , ILE A:263 , ILE A:272 , ASN A:274 , ASN A:342 , LYS A:429 , SER A:457 , SER A:477 , GLY A:478 , LEU A:481 , SER A:505 , GLY A:506 , GLY A:507 , TYR A:528 , SER A:529 , ORO A:1003 , HOH A:1009 , HOH A:1011 , HOH A:1014 , HOH A:1031
BINDING SITE FOR RESIDUE FMN A 1002
4
AC4
SOFTWARE
LYS A:229 , ASN A:274 , CYS A:276 , GLY A:277 , PHE A:278 , ASN A:342 , SER A:345 , ASN A:347 , ASN A:458 , THR A:459 , FMN A:1002
BINDING SITE FOR RESIDUE ORO A 1003
5
AC5
SOFTWARE
ASP A:169 , LEU A:172 , LYS A:173 , TYR A:551 , GLY A:554
BINDING SITE FOR RESIDUE N8E A 1004
6
AC6
SOFTWARE
ILE A:170 , PHE A:171 , PHE A:174 , LEU A:187 , ILE A:196
BINDING SITE FOR RESIDUE N8E A 1005
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:243-262)
2: DHODEHASE_2 (A:502-522)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRD_PLAF7
243-262
1
A:243-262
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRD_PLAF7
502-522
1
A:502-522
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1tv5a1 (A:158-566)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
(1)
1a
d1tv5a1
A:158-566
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1tv5A00 (A:158-566)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Malaria parasite p (Plasmodium falciparum)
(13)
1a
1tv5A00
A:158-566
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_DHO_dh_1tv5A01 (A:207-550)
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Clan
:
TIM_barrel
(694)
Family
:
DHO_dh
(22)
Plasmodium falciparum (isolate 3D7)
(3)
1a
DHO_dh-1tv5A01
A:207-550
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Chain A
Asymmetric Unit 1
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Asym.Unit (74 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (198 KB)
Header - Biol.Unit 2
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