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1TUI
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (192 KB)
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(1)
Title
:
INTACT ELONGATION FACTOR TU IN COMPLEX WITH GDP
Authors
:
G. Polekhina, S. Thirup, M. Kjeldgaard, P. Nissen, C. Lippmann, J. Nyborg
Date
:
23 May 96 (Deposition) - 05 Jun 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Elongation Factor, Protein Biosynthesis, Gtp-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Polekhina, S. Thirup, M. Kjeldgaard, P. Nissen, C. Lippmann, J. Nyborg
Helix Unwinding In The Effector Region Of Elongation Factor Ef-Tu-Gdp.
Structure V. 4 1141 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
3
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
3
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , ASP A:81 , CYS A:82 , GDP A:407 , HOH A:419
BINDING SITE FOR RESIDUE MG A 408
2
AC2
SOFTWARE
THR B:25 , CYS B:82 , GDP B:407 , HOH B:419
BINDING SITE FOR RESIDUE MG B 408
3
AC3
SOFTWARE
THR C:25 , CYS C:82 , GDP C:407 , HOH C:419
BINDING SITE FOR RESIDUE MG C 408
4
AC4
SOFTWARE
ASP A:21 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ASN A:136 , LYS A:137 , ASP A:139 , SER A:174 , ALA A:175 , LEU A:176 , MG A:408 , HOH A:419 , MET B:140 , LEU B:176 , GDP B:407
BINDING SITE FOR RESIDUE GDP A 407
5
AC5
SOFTWARE
MET A:140 , LEU A:176 , GDP A:407 , ASP B:21 , HIS B:22 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , TYR B:47 , ASN B:136 , LYS B:137 , ASP B:139 , SER B:174 , ALA B:175 , LEU B:176 , MG B:408 , HOH B:419
BINDING SITE FOR RESIDUE GDP B 407
6
AC6
SOFTWARE
ASP C:21 , HIS C:22 , GLY C:23 , LYS C:24 , THR C:25 , THR C:26 , TYR C:47 , ASN C:136 , LYS C:137 , ASP C:139 , MET C:140 , SER C:174 , ALA C:175 , LEU C:176 , MG C:408 , HOH C:419
BINDING SITE FOR RESIDUE GDP C 407
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:51-66,B:51-66,C:51-66)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU_THEAQ
52-67
3
A:51-66
B:51-66
C:51-66
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d1tuia2 (A:314-405)
1b: SCOP_d1tuib2 (B:313-405)
1c: SCOP_d1tuic2 (C:313-405)
2a: SCOP_d1tuia1 (A:213-313)
2b: SCOP_d1tuib1 (B:213-312)
2c: SCOP_d1tuic1 (C:213-312)
3a: SCOP_d1tuia3 (A:9-212)
3b: SCOP_d1tuib3 (B:9-212)
3c: SCOP_d1tuic3 (C:9-212)
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(
)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Thermus aquaticus [TaxId: 271]
(4)
1a
d1tuia2
A:314-405
1b
d1tuib2
B:313-405
1c
d1tuic2
C:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Thermus aquaticus [TaxId: 271]
(4)
2a
d1tuia1
A:213-313
2b
d1tuib1
B:213-312
2c
d1tuic1
C:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Thermus aquaticus [TaxId: 271]
(4)
3a
d1tuia3
A:9-212
3b
d1tuib3
B:9-212
3c
d1tuic3
C:9-212
[
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CATH Domains
(2, 9)
Info
all CATH domains
1a: CATH_1tuiA01 (A:9-213)
1b: CATH_1tuiB01 (B:9-213)
1c: CATH_1tuiC01 (C:9-213)
2a: CATH_1tuiA03 (A:311-404)
2b: CATH_1tuiB03 (B:311-404)
2c: CATH_1tuiC03 (C:311-404)
2d: CATH_1tuiA02 (A:216-307)
2e: CATH_1tuiB02 (B:216-307)
2f: CATH_1tuiC02 (C:216-307)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271. Strain: yt-1
(1)
1a
1tuiA01
A:9-213
1b
1tuiB01
B:9-213
1c
1tuiC01
C:9-213
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Thermus aquaticus. Organism_taxid: 271. Strain: yt-1
(1)
2a
1tuiA03
A:311-404
2b
1tuiB03
B:311-404
2c
1tuiC03
C:311-404
2d
1tuiA02
A:216-307
2e
1tuiB02
B:216-307
2f
1tuiC02
C:216-307
[
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Pfam Domains
(3, 9)
Info
all PFAM domains
1a: PFAM_GTP_EFTU_1tuiC01 (C:9-212)
1b: PFAM_GTP_EFTU_1tuiC02 (C:9-212)
1c: PFAM_GTP_EFTU_1tuiC03 (C:9-212)
2a: PFAM_GTP_EFTU_D2_1tuiC04 (C:235-305)
2b: PFAM_GTP_EFTU_D2_1tuiC05 (C:235-305)
2c: PFAM_GTP_EFTU_D2_1tuiC06 (C:235-305)
3a: PFAM_GTP_EFTU_D3_1tuiC07 (C:309-404)
3b: PFAM_GTP_EFTU_D3_1tuiC08 (C:309-404)
3c: PFAM_GTP_EFTU_D3_1tuiC09 (C:309-404)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Thermus aquaticus
(3)
1a
GTP_EFTU-1tuiC01
C:9-212
1b
GTP_EFTU-1tuiC02
C:9-212
1c
GTP_EFTU-1tuiC03
C:9-212
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Thermus aquaticus
(3)
2a
GTP_EFTU_D2-1tuiC04
C:235-305
2b
GTP_EFTU_D2-1tuiC05
C:235-305
2c
GTP_EFTU_D2-1tuiC06
C:235-305
Clan
:
no clan defined [family: GTP_EFTU_D3]
(11)
Family
:
GTP_EFTU_D3
(11)
Thermus aquaticus
(3)
3a
GTP_EFTU_D3-1tuiC07
C:309-404
3b
GTP_EFTU_D3-1tuiC08
C:309-404
3c
GTP_EFTU_D3-1tuiC09
C:309-404
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