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1TUB
Asym. Unit
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Asym.Unit (129 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
TUBULIN ALPHA-BETA DIMER, ELECTRON DIFFRACTION
Authors
:
E. Nogales, K. H. Downing
Date
:
23 Sep 97 (Deposition) - 07 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON CRYSTALLOGRAPHY
Resolution
:
3.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Microtubules, Alpha-Tubulin, Beta-Tubulin, Gtpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nogales, S. G. Wolf, K. H. Downing
Structure Of The Alpha Beta Tubulin Dimer By Electron Crystallography.
Nature V. 391 199 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3a: TAXOTERE (TXLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
TXL
1
Ligand/Ion
TAXOTERE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:11 , CYS B:12 , GLN B:15 , ASN B:101 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , SER B:178 , TYR B:185 , ASN B:206
BINDING SITE FOR RESIDUE GDP B 500
2
AC2
SOFTWARE
GLN A:11 , ALA A:12 , GLU A:71 , ALA A:100 , ASN A:101 , GLY A:143 , GLY A:144 , THR A:145 , ASN A:206 , TYR A:224 , LEU A:227 , ASN A:228 , LEU B:248 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 500
3
AC3
SOFTWARE
VAL B:23 , LEU B:217 , ASP B:226 , HIS B:229 , SER B:236 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , ARG B:320 , ARG B:369 , GLY B:370 , LEU B:371
BINDING SITE FOR RESIDUE TXL B 501
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TBB_PIG_001 (H37V, chain B, )
2: VAR_TBB_PIG_002 (N50S, chain B, )
3: VAR_TBA1A_PIG_001 (G265G, chain A, )
4: VAR_TBA1A_PIG_002 (G265I, chain A, )
5: VAR_TBA1A_PIG_003 (H266I, chain A, )
6: VAR_TBB_PIG_003 (S277A, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TBB_PIG_001
*
H
37
V
TBB_PIG
---
---
B
H
37
V
2
UniProt
VAR_TBB_PIG_002
*
N
48
S
TBB_PIG
---
---
B
N
50
S
3
UniProt
VAR_TBA1A_PIG_001
*
A
265
G
TBA1A_PIG
---
---
A
G
265
G
4
UniProt
VAR_TBA1A_PIG_002
*
A
265
I
TBA1A_PIG
---
---
A
G
265
I
5
UniProt
VAR_TBA1A_PIG_003
*
H
266
I
TBA1A_PIG
---
---
A
H
266
I
6
UniProt
VAR_TBB_PIG_003
*
S
275
A
TBB_PIG
---
---
B
S
277
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: TUBULIN_B_AUTOREG (B:1-4)
2: TUBULIN (B:142-148,A:142-148)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUBULIN_B_AUTOREG
PS00228
Tubulin-beta mRNA autoregulation signal.
TBB_PIG
1-4
1
B:1-4
2
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB_PIG
140-146
1
B:142-148
TBA1A_PIG
142-148
1
A:142-148
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1tuba2 (A:246-440)
2a: SCOP_d1tubb2 (B:246-437)
3a: SCOP_d1tuba1 (A:1-245)
4a: SCOP_d1tubb1 (B:1-245)
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(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
Tubulin alpha-subunit
(10)
Pig (Sus scrofa) [TaxId: 9823]
(3)
1a
d1tuba2
A:246-440
Protein domain
:
Tubulin beta-subunit
(8)
Pig (Sus scrofa) [TaxId: 9823]
(3)
2a
d1tubb2
B:246-437
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
Tubulin alpha-subunit
(9)
Pig (Sus scrofa) [TaxId: 9823]
(3)
3a
d1tuba1
A:1-245
Protein domain
:
Tubulin beta-subunit
(8)
Pig (Sus scrofa) [TaxId: 9823]
(3)
4a
d1tubb1
B:1-245
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1tubB02 (B:262-383)
1b: CATH_1tubA02 (A:269-383)
2a: CATH_1tubA01 (A:1-268)
2b: CATH_1tubB01 (B:1-261)
3a: CATH_1tubA03 (A:384-440)
3b: CATH_1tubB03 (B:384-437)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.20, no name defined]
(18)
Pig (Sus scrofa)
(1)
1a
1tubB02
B:262-383
1b
1tubA02
A:269-383
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1440, no name defined]
(23)
Pig (Sus scrofa)
(1)
2a
1tubA01
A:1-268
2b
1tubB01
B:1-261
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(5)
Pig (Sus scrofa)
(1)
3a
1tubA03
A:384-440
3b
1tubB03
B:384-437
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Tubulin_1tubA01 (A:3-226)
1b: PFAM_Tubulin_1tubB01 (B:3-226)
2a: PFAM_Tubulin_C_1tubA02 (A:263-393)
2b: PFAM_Tubulin_C_1tubB02 (B:263-393)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tubulin-like
(34)
Family
:
Tubulin
(34)
Sus scrofa (Pig)
(3)
1a
Tubulin-1tubA01
A:3-226
1b
Tubulin-1tubB01
B:3-226
Family
:
Tubulin_C
(11)
Sus scrofa (Pig)
(3)
2a
Tubulin_C-1tubA02
A:263-393
2b
Tubulin_C-1tubB02
B:263-393
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]
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Asymmetric Unit 1
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