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1TU5
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE PLASMA COPPER-CONTAINING AMINE OXIDASE
Authors
:
M. Lunelli, M. L. Di Paolo, M. Biadene, V. Calderone, M. Scarpa, R. Batt A. Rigo, G. Zanotti
Date
:
24 Jun 04 (Deposition) - 22 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amine Oxidase, Oxidoreductase, Quinoenzyme, Tpq
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lunelli, M. L. Di Paolo, M. Biadene, V. Calderone, R. Battistutta, M. Scarpa, A. Rigo, G. Zanotti
Crystal Structure Of Amine Oxidase From Bovine Serum.
J. Mol. Biol. V. 346 991 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
6b: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
CU
2
Ligand/Ion
COPPER (II) ION
4
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6
TPQ
2
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:129 , GLN A:132 , ASN A:136 , THR A:138 , VAL A:156 , PRO A:162 , NAG A:801 , HOH A:912
BINDING SITE FOR RESIDUE NAG A 800
02
AC2
SOFTWARE
LEU A:78 , NAG A:800 , NAG A:802
BINDING SITE FOR RESIDUE NAG A 801
03
AC3
SOFTWARE
NAG A:801
BINDING SITE FOR RESIDUE NAG A 802
04
AC4
SOFTWARE
LYS A:206 , ASN A:231 , LEU B:447
BINDING SITE FOR RESIDUE NAG A 803
05
AC5
SOFTWARE
THR A:570 , GLU A:572 , ASN A:665
BINDING SITE FOR RESIDUE NDG A 804
06
AC6
SOFTWARE
PHE B:129 , GLN B:132 , ASN B:136 , THR B:138 , VAL B:156 , PRO B:162 , NAG B:801 , HOH B:1959
BINDING SITE FOR RESIDUE NDG B 800
07
AC7
SOFTWARE
NDG B:800 , NAG B:802 , HOH B:2043
BINDING SITE FOR RESIDUE NAG B 801
08
AC8
SOFTWARE
PRO B:554 , NAG B:801
BINDING SITE FOR RESIDUE NAG B 802
09
AC9
SOFTWARE
GLU B:572 , ASN B:665
BINDING SITE FOR RESIDUE NAG B 804
10
BC1
SOFTWARE
HIS A:519 , HIS A:521 , HIS A:683 , HOH A:905 , HOH A:908
BINDING SITE FOR RESIDUE CU A 901
11
BC2
SOFTWARE
ASP A:528 , LEU A:529 , ASP A:530 , ASP A:672 , LEU A:673 , HOH A:931
BINDING SITE FOR RESIDUE CA A 902
12
BC3
SOFTWARE
GLU A:571 , PHE A:662 , ASN A:664 , GLU A:666 , HOH A:934 , HOH A:976
BINDING SITE FOR RESIDUE CA A 903
13
BC4
SOFTWARE
ASN A:481 , ARG A:705
BINDING SITE FOR RESIDUE CL A 904
14
BC5
SOFTWARE
HIS B:519 , HIS B:521 , HIS B:683 , HOH B:1906 , HOH B:1907
BINDING SITE FOR RESIDUE CU B 901
15
BC6
SOFTWARE
ASP B:528 , LEU B:529 , ASP B:530 , ASP B:672 , LEU B:673 , HOH B:1995
BINDING SITE FOR RESIDUE CA B 1902
16
BC7
SOFTWARE
GLU B:571 , PHE B:662 , ASN B:664 , GLU B:666 , HOH B:1952 , HOH B:2029
BINDING SITE FOR RESIDUE CA B 1903
17
BC8
SOFTWARE
ASN B:481 , ARG B:705
BINDING SITE FOR RESIDUE CL B 1904
18
BC9
SOFTWARE
GLN A:559 , ARG B:382 , SER B:618
BINDING SITE FOR RESIDUE CL B 1905
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:459-472,B:459-472)
2: COPPER_AMINE_OXID_2 (A:678-691,B:678-691)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AOCX_BOVIN
459-472
2
A:459-472
B:459-472
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AOCX_BOVIN
678-691
2
A:678-691
B:678-691
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:57-533 (gaps) | B:57-533 (gaps))
Exon 1.2 (A:533-628 | B:533-628)
Exon 1.3 (A:628-671 | B:628-671)
Exon 1.4 (A:672-717 | B:672-717)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000001383
1
ENSBTAE00000011032
chr19:
44323010-44324656
1647
AOCX_BOVIN
1-533
533
2
A:57-533 (gaps)
B:57-533 (gaps)
477
477
1.2
ENSBTAT00000001383
2
ENSBTAE00000402680
chr19:
44324876-44325161
286
AOCX_BOVIN
533-628
96
2
A:533-628
B:533-628
96
96
1.3
ENSBTAT00000001383
3
ENSBTAE00000408280
chr19:
44325567-44325696
130
AOCX_BOVIN
628-671
44
2
A:628-671
B:628-671
44
44
1.4
ENSBTAT00000001383
4
ENSBTAE00000011035
chr19:
44326418-44326988
571
AOCX_BOVIN
672-762
91
2
A:672-717
B:672-717
46
46
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
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Sorry, no Info available
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1tu5A01 (A:57-164)
1b: CATH_1tu5B01 (B:57-170)
1c: CATH_1tu5B02 (B:171-292)
1d: CATH_1tu5A02 (A:165-291)
2a: CATH_1tu5A03 (A:292-717)
2b: CATH_1tu5B03 (B:321-717)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Cattle (Bos taurus)
(2)
1a
1tu5A01
A:57-164
1b
1tu5B01
B:57-170
1c
1tu5B02
B:171-292
1d
1tu5A02
A:165-291
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Cattle (Bos taurus)
(2)
2a
1tu5A03
A:292-717
2b
1tu5B03
B:321-717
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN2_1tu5B01 (B:65-151)
1b: PFAM_Cu_amine_oxidN2_1tu5B02 (B:65-151)
2a: PFAM_Cu_amine_oxidN3_1tu5B03 (B:168-268)
2b: PFAM_Cu_amine_oxidN3_1tu5B04 (B:168-268)
3a: PFAM_Cu_amine_oxid_1tu5B05 (B:321-717)
3b: PFAM_Cu_amine_oxid_1tu5B06 (B:321-717)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN2
(27)
Bos taurus (Bovine)
(2)
1a
Cu_amine_oxidN2-1tu5B01
B:65-151
1b
Cu_amine_oxidN2-1tu5B02
B:65-151
Family
:
Cu_amine_oxidN3
(37)
Bos taurus (Bovine)
(2)
2a
Cu_amine_oxidN3-1tu5B03
B:168-268
2b
Cu_amine_oxidN3-1tu5B04
B:168-268
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Bos taurus (Bovine)
(2)
3a
Cu_amine_oxid-1tu5B05
B:321-717
3b
Cu_amine_oxid-1tu5B06
B:321-717
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