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1TTX
Asym. Unit
Info
Asym.Unit (627 KB)
Biol.Unit 1 (33 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF HUMAN BETA PARVALBUMIN (ONCOMODULIN) REFINED WITH A PARAMAGNETISM BASED STRATEGY
Authors
:
E. Babini, I. Bertini, F. Capozzi, C. Del Bianco, D. Hollender, T. Kiss C. Luchinat, A. Quattrone, Structural Proteomics In Europe (Spi
Date
:
23 Jun 04 (Deposition) - 18 Jan 05 (Release) - 28 Dec 16 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Oncomodulin, Ef-Hand, Lanthanide, Structural Genomics, Structural Proteomics In Europe, Spine, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Babini, I. Bertini, F. Capozzi, C. Del Bianco, D. Hollender, T. Kiss, C. Luchinat, A. Quattrone
Solution Structure Of Human Beta-Parvalbumin And Structural Comparison With Its Paralog Alpha-Parvalbumin And With Thei Rat Orthologs(, )
Biochemistry V. 43 16076 2004
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:91 , ASP A:93 , ASP A:95 , LYS A:97 , GLU A:102
BINDING SITE FOR RESIDUE CA A 110
2
AC2
SOFTWARE
ASP A:52 , SER A:56 , TYR A:58 , GLU A:63
BINDING SITE FOR RESIDUE CA A 111
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:39-74|A:78-109,A:39-74|A:78-109)
2: EF_HAND_1 (A:52-64|A:91-103,A:52-64|A:91-103)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
OCM2_HUMAN
39-74
78-109
2
A:39-74
A:78-109
ONCO_HUMAN
39-74
78-109
2
A:39-74
A:78-109
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
OCM2_HUMAN
52-64
91-103
2
A:52-64
A:91-103
ONCO_HUMAN
52-64
91-103
2
A:52-64
A:91-103
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:1-21)
Exon 1.3 (A:21-65)
Exon 1.4 (A:65-102)
Exon 1.5b (A:102-109)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000242104
2a
ENSE00001711752
chr7:
5920429-5920581
153
ONCO_HUMAN
1-21
21
1
A:1-21
21
1.3
ENST00000242104
3
ENSE00001753601
chr7:
5922124-5922256
133
ONCO_HUMAN
21-65
45
1
A:21-65
45
1.4
ENST00000242104
4
ENSE00001690920
chr7:
5923521-5923630
110
ONCO_HUMAN
65-102
38
1
A:65-102
38
1.5b
ENST00000242104
5b
ENSE00001649741
chr7:
5925695-5925993
299
ONCO_HUMAN
102-109
8
1
A:102-109
8
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ttxa_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Parvalbumin
(36)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ttxa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ttxA00 (A:1-109)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1ttxA00
A:1-109
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1ttxA01 (A:43-107)
2a: PFAM_EF_hand_6_1ttxA02 (A:70-109)
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Clans
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-1ttxA01
A:43-107
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-1ttxA02
A:70-109
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Chain A
Asymmetric Unit 1
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Asym.Unit (627 KB)
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