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1TT7
Asym. Unit
Info
Asym.Unit (604 KB)
Biol.Unit 1 (596 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PROTEIN YHFP
Authors
:
T. Min, J. Gorman, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
22 Jun 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Yhfp, Alcohol Dehydrogenase, Zn-Dependent, Nad, Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Min, J. Gorman, L. Shapiro
The Structural Study Of Hypothetical Protein Yhfp
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
View:
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No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1tt7a1 (A:2-127,A:295-330)
1b: SCOP_d1tt7b1 (B:2-127,B:295-330)
1c: SCOP_d1tt7c1 (C:2-127,C:295-330)
1d: SCOP_d1tt7d1 (D:2-127,D:295-330)
1e: SCOP_d1tt7e1 (E:2-127,E:295-330)
1f: SCOP_d1tt7f1 (F:2-127,F:295-330)
2a: SCOP_d1tt7a2 (A:128-294)
2b: SCOP_d1tt7b2 (B:128-294)
2c: SCOP_d1tt7c2 (C:128-294)
2d: SCOP_d1tt7d2 (D:128-294)
2e: SCOP_d1tt7e2 (E:128-294)
2f: SCOP_d1tt7f2 (F:128-294)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Hypothetical protein YhfP
(2)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d1tt7a1
A:2-127,A:295-330
1b
d1tt7b1
B:2-127,B:295-330
1c
d1tt7c1
C:2-127,C:295-330
1d
d1tt7d1
D:2-127,D:295-330
1e
d1tt7e1
E:2-127,E:295-330
1f
d1tt7f1
F:2-127,F:295-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Hypothetical protein YhfP
(2)
Bacillus subtilis [TaxId: 1423]
(2)
2a
d1tt7a2
A:128-294
2b
d1tt7b2
B:128-294
2c
d1tt7c2
C:128-294
2d
d1tt7d2
D:128-294
2e
d1tt7e2
E:128-294
2f
d1tt7f2
F:128-294
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1tt7A02 (A:130-295)
1b: CATH_1tt7B02 (B:130-295)
1c: CATH_1tt7C02 (C:130-295)
1d: CATH_1tt7D02 (D:130-295)
1e: CATH_1tt7E02 (E:130-295)
1f: CATH_1tt7F02 (F:130-295)
2a: CATH_1tt7A01 (A:2-129,A:296-330)
2b: CATH_1tt7B01 (B:2-129,B:296-330)
2c: CATH_1tt7C01 (C:2-129,C:296-330)
2d: CATH_1tt7D01 (D:2-129,D:296-330)
2e: CATH_1tt7E01 (E:2-129,E:296-330)
2f: CATH_1tt7F01 (F:2-129,F:296-330)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Bacillus subtilis. Organism_taxid: 1423.
(9)
1a
1tt7A02
A:130-295
1b
1tt7B02
B:130-295
1c
1tt7C02
C:130-295
1d
1tt7D02
D:130-295
1e
1tt7E02
E:130-295
1f
1tt7F02
F:130-295
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Bacillus subtilis. Organism_taxid: 1423.
(2)
2a
1tt7A01
A:2-129,A:296-330
2b
1tt7B01
B:2-129,B:296-330
2c
1tt7C01
C:2-129,C:296-330
2d
1tt7D01
D:2-129,D:296-330
2e
1tt7E01
E:2-129,E:296-330
2f
1tt7F01
F:2-129,F:296-330
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ADH_N_1tt7F01 (F:31-93)
1b: PFAM_ADH_N_1tt7F02 (F:31-93)
1c: PFAM_ADH_N_1tt7F03 (F:31-93)
1d: PFAM_ADH_N_1tt7F04 (F:31-93)
1e: PFAM_ADH_N_1tt7F05 (F:31-93)
1f: PFAM_ADH_N_1tt7F06 (F:31-93)
2a: PFAM_ADH_zinc_N_1tt7F07 (F:162-289)
2b: PFAM_ADH_zinc_N_1tt7F08 (F:162-289)
2c: PFAM_ADH_zinc_N_1tt7F09 (F:162-289)
2d: PFAM_ADH_zinc_N_1tt7F10 (F:162-289)
2e: PFAM_ADH_zinc_N_1tt7F11 (F:162-289)
2f: PFAM_ADH_zinc_N_1tt7F12 (F:162-289)
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)
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)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Bacillus subtilis
(2)
1a
ADH_N-1tt7F01
F:31-93
1b
ADH_N-1tt7F02
F:31-93
1c
ADH_N-1tt7F03
F:31-93
1d
ADH_N-1tt7F04
F:31-93
1e
ADH_N-1tt7F05
F:31-93
1f
ADH_N-1tt7F06
F:31-93
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Bacillus subtilis
(2)
2a
ADH_zinc_N-1tt7F07
F:162-289
2b
ADH_zinc_N-1tt7F08
F:162-289
2c
ADH_zinc_N-1tt7F09
F:162-289
2d
ADH_zinc_N-1tt7F10
F:162-289
2e
ADH_zinc_N-1tt7F11
F:162-289
2f
ADH_zinc_N-1tt7F12
F:162-289
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