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1TT0
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (425 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PYRANOSE 2-OXIDASE
Authors
:
B. M. Hallberg, C. Leitner, D. Haltrich, C. Divne
Date
:
21 Jun 04 (Deposition) - 21 Jun 05 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Gmc Oxidoreductase, Alpha/Beta Structure, Rossmann Fold, Phbh Fold, Homotetramer, 8-Alpha-(N3) Histidyl Flavinylation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Hallberg, C. Leitner, D. Haltrich, C. Divne
Crystal Structure Of The 270 Kda Homotetrameric Lignin-Degrading Enzyme Pyranose 2-Oxidase
J. Mol. Biol. V. 341 781 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
1b: DODECAETHYLENE GLYCOL (12Pb)
1c: DODECAETHYLENE GLYCOL (12Pc)
1d: DODECAETHYLENE GLYCOL (12Pd)
1e: DODECAETHYLENE GLYCOL (12Pe)
1f: DODECAETHYLENE GLYCOL (12Pf)
1g: DODECAETHYLENE GLYCOL (12Pg)
1h: DODECAETHYLENE GLYCOL (12Ph)
1i: DODECAETHYLENE GLYCOL (12Pi)
1j: DODECAETHYLENE GLYCOL (12Pj)
1k: DODECAETHYLENE GLYCOL (12Pk)
1l: DODECAETHYLENE GLYCOL (12Pl)
1m: DODECAETHYLENE GLYCOL (12Pm)
1n: DODECAETHYLENE GLYCOL (12Pn)
1o: DODECAETHYLENE GLYCOL (12Po)
1p: DODECAETHYLENE GLYCOL (12Pp)
1q: DODECAETHYLENE GLYCOL (12Pq)
1r: DODECAETHYLENE GLYCOL (12Pr)
1s: DODECAETHYLENE GLYCOL (12Ps)
1t: DODECAETHYLENE GLYCOL (12Pt)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
3d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
20
Ligand/Ion
DODECAETHYLENE GLYCOL
2
ACT
4
Ligand/Ion
ACETATE ION
3
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR B:169 , GLN B:448 , PHE B:454 , HIS B:548 , ASN B:593 , FAD B:4441 , HOH B:6339 , HOH B:6625
BINDING SITE FOR RESIDUE ACT B 3901
02
AC2
SOFTWARE
THR A:169 , GLN A:448 , PHE A:454 , HIS A:548 , ASN A:593 , FAD A:3331 , HOH A:5177 , HOH A:5644
BINDING SITE FOR RESIDUE ACT A 4901
03
AC3
SOFTWARE
THR D:169 , GLN D:448 , PHE D:454 , HIS D:548 , ASN D:593 , FAD D:5551 , HOH D:6156
BINDING SITE FOR RESIDUE ACT D 5901
04
AC4
SOFTWARE
THR C:169 , GLN C:448 , PHE C:454 , HIS C:548 , ASN C:593 , FAD C:6661 , HOH C:7067
BINDING SITE FOR RESIDUE ACT C 6901
05
AC5
SOFTWARE
VAL A:52 , GLY A:53 , GLY A:55 , PRO A:56 , ILE A:57 , ASP A:76 , ILE A:77 , THR A:158 , ARG A:159 , VAL A:160 , GLY A:163 , MET A:164 , HIS A:167 , TRP A:168 , THR A:169 , CYS A:170 , ALA A:171 , VAL A:281 , CYS A:283 , THR A:319 , ALA A:320 , HIS A:324 , LEU A:547 , ASN A:593 , THR A:595 , ACT A:4901 , HOH A:5003 , HOH A:5008 , HOH A:5020 , HOH A:5057 , HOH A:5065 , HOH A:5096 , HOH A:5097 , HOH A:5099 , HOH A:5117
BINDING SITE FOR RESIDUE FAD A 3331
06
AC6
SOFTWARE
VAL B:52 , GLY B:53 , GLY B:55 , PRO B:56 , ILE B:57 , ASP B:76 , ILE B:77 , THR B:158 , ARG B:159 , VAL B:160 , GLY B:163 , MET B:164 , SER B:165 , HIS B:167 , TRP B:168 , THR B:169 , CYS B:170 , ALA B:171 , VAL B:281 , CYS B:283 , THR B:319 , ALA B:320 , HIS B:324 , LEU B:547 , ASN B:593 , THR B:595 , ACT B:3901 , HOH B:6013 , HOH B:6032 , HOH B:6035 , HOH B:6050 , HOH B:6058 , HOH B:6073 , HOH B:6080 , HOH B:6219
BINDING SITE FOR RESIDUE FAD B 4441
07
AC7
SOFTWARE
VAL D:52 , GLY D:53 , GLY D:55 , PRO D:56 , ILE D:57 , ASP D:76 , ILE D:77 , THR D:158 , ARG D:159 , VAL D:160 , GLY D:163 , MET D:164 , SER D:165 , HIS D:167 , TRP D:168 , THR D:169 , CYS D:170 , ALA D:171 , VAL D:281 , CYS D:283 , THR D:319 , ALA D:320 , HIS D:324 , LEU D:547 , ASN D:593 , THR D:595 , ACT D:5901 , HOH D:5913 , HOH D:5939 , HOH D:5943 , HOH D:5952 , HOH D:5974 , HOH D:5980 , HOH D:5983 , HOH D:6051
BINDING SITE FOR RESIDUE FAD D 5551
08
AC8
SOFTWARE
VAL C:52 , GLY C:53 , GLY C:55 , PRO C:56 , ILE C:57 , ASP C:76 , ILE C:77 , THR C:158 , ARG C:159 , VAL C:160 , GLY C:163 , MET C:164 , SER C:165 , HIS C:167 , TRP C:168 , THR C:169 , CYS C:170 , ALA C:171 , VAL C:281 , CYS C:283 , THR C:319 , ALA C:320 , HIS C:324 , LEU C:547 , ASN C:593 , THR C:595 , ACT C:6901 , HOH C:6914 , HOH C:6942 , HOH C:6953 , HOH C:6978 , HOH C:6979 , HOH C:6999 , HOH C:7020 , HOH C:7050
BINDING SITE FOR RESIDUE FAD C 6661
09
AC9
SOFTWARE
PRO B:144 , GLU B:145 , GLN B:146 , ASP B:147 , PRO B:148 , ARG B:339 , HOH B:6241 , HOH B:6496 , SER C:134
BINDING SITE FOR RESIDUE 12P B 3101
10
BC1
SOFTWARE
GLY B:574 , LYS B:576
BINDING SITE FOR RESIDUE 12P B 3102
11
BC2
SOFTWARE
TYR B:456 , GLY B:457 , ALA B:458 , GLN B:460 , SER B:536 , GLN B:539 , MET B:541 , HOH B:6634
BINDING SITE FOR RESIDUE 12P B 3103
12
BC3
SOFTWARE
LEU B:84
BINDING SITE FOR RESIDUE 12P B 3104
13
BC4
SOFTWARE
GLN B:611 , ASN B:612 , THR B:614 , HOH B:6443
BINDING SITE FOR RESIDUE 12P B 3105
14
BC5
SOFTWARE
12P A:4001 , HOH D:6294
BINDING SITE FOR RESIDUE 12P D 4101
15
BC6
SOFTWARE
PRO A:144 , GLN A:146 , ASP A:147 , PRO A:148 , HOH A:5273 , SER D:134 , 12P D:4101
BINDING SITE FOR RESIDUE 12P A 4001
16
BC7
SOFTWARE
ARG A:571 , GLY A:574 , LYS A:576 , TYR A:608 , HOH A:5184 , HOH A:5289 , HOH A:5602
BINDING SITE FOR RESIDUE 12P A 4002
17
BC8
SOFTWARE
TYR A:456 , GLY A:457 , ALA A:458 , GLN A:539 , MET A:541 , HOH A:5626
BINDING SITE FOR RESIDUE 12P A 4003
18
BC9
SOFTWARE
LEU A:84
BINDING SITE FOR RESIDUE 12P A 4004
19
CC1
SOFTWARE
SER A:134 , THR A:135 , HOH A:5137 , HOH A:5352 , HOH A:5628 , PRO D:144 , ASP D:147 , PRO D:148
BINDING SITE FOR RESIDUE 12P A 5001
20
CC2
SOFTWARE
SER D:293 , ARG D:571 , GLY D:574 , LYS D:576
BINDING SITE FOR RESIDUE 12P D 5002
21
CC3
SOFTWARE
TYR D:456 , GLY D:457 , ALA D:458 , GLN D:460 , SER D:536 , GLN D:539 , MET D:541 , HOH D:6445 , HOH D:6448
BINDING SITE FOR RESIDUE 12P D 5003
22
CC4
SOFTWARE
LEU D:84
BINDING SITE FOR RESIDUE 12P D 5004
23
CC5
SOFTWARE
ARG D:288 , ASN D:289 , ALA D:290 , ASN D:292 , GLY D:333 , GLU D:347 , HOH D:6155
BINDING SITE FOR RESIDUE 12P D 5005
24
CC6
SOFTWARE
SER B:134 , THR B:135 , HOH B:6322 , HOH B:6442 , PRO C:144 , GLU C:145 , GLN C:146 , ASP C:147 , PRO C:148
BINDING SITE FOR RESIDUE 12P B 6001
25
CC7
SOFTWARE
GLY C:574 , LYS C:576 , HOH C:7109
BINDING SITE FOR RESIDUE 12P C 6002
26
CC8
SOFTWARE
PHE C:363 , TYR C:456 , GLY C:457 , ALA C:458 , SER C:536 , GLN C:539 , MET C:541
BINDING SITE FOR RESIDUE 12P C 6003
27
CC9
SOFTWARE
LEU C:84
BINDING SITE FOR RESIDUE 12P C 6004
28
DC1
SOFTWARE
ARG C:288 , ASN C:289 , ALA C:290 , ASN C:292 , GLY C:333 , GLU C:347 , HOH C:7270
BINDING SITE FOR RESIDUE 12P C 6005
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_GMC_oxred_C_1tt0D01 (D:540-605)
1b: PFAM_GMC_oxred_C_1tt0D02 (D:540-605)
1c: PFAM_GMC_oxred_C_1tt0D03 (D:540-605)
1d: PFAM_GMC_oxred_C_1tt0D04 (D:540-605)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: GMC_oxred_C]
(22)
Family
:
GMC_oxred_C
(22)
Trametes ochracea (White-rot fungus) (Trametes multicolor)
(13)
1a
GMC_oxred_C-1tt0D01
D:540-605
1b
GMC_oxred_C-1tt0D02
D:540-605
1c
GMC_oxred_C-1tt0D03
D:540-605
1d
GMC_oxred_C-1tt0D04
D:540-605
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