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Models
(20 )
Title
:
SOLUTION STRUCTURE OF HUMAN ONCOGENIC PROTEIN GANKYRIN
Authors
:
C. Yuan, J. Li, A. Mahajan, M. J. Poi, I. J. Byeon, M. D. Tsai
Date
:
19 Jun 04 (Deposition) - 16 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Gankyrin, Oncoprotein, Ankyrin Repeats, Nmr, Protein Structure, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yuan, J. Li, A. Mahajan, M. J. Poi, I. J. Byeon, M. D. Tsai
Solution Structure Of The Human Oncogenic Protein Gankyrin Containing Seven Ankyrin Repeats And Analysis Of Its Structure--Function Relationship.
Biochemistry V. 43 12152 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (A:39-212)
2: ANK_REPEAT (A:39-71|A:72-104|A:105-137|A:138-1...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
PSD10_HUMAN
39-212
1
A:39-212
2
ANK_REPEAT
PS50088
Ankyrin repeat profile.
PSD10_HUMAN
39-71
72-104
105-137
138-170
171-203
5
A:39-71
A:72-104
A:105-137
A:138-170
A:171-203
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:1-38)
Exon 1.2a (A:39-71)
Exon 1.3b (A:72-120)
Exon 1.4b (A:121-176)
Exon 1.5e (A:176-226)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3b
4: Boundary 1.3b/1.4b
5: Boundary 1.4b/1.5e
6: Boundary 1.5e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000217958
1a
ENSE00000674389
X:107334848-107334637
212
PSD10_HUMAN
1-38
38
1
A:1-38
38
1.2a
ENST00000217958
2a
ENSE00000674388
X:107332080-107331982
99
PSD10_HUMAN
39-71
33
1
A:39-71
33
1.3b
ENST00000217958
3b
ENSE00000674381
X:107331329-107331183
147
PSD10_HUMAN
72-120
49
1
A:72-120
49
1.4b
ENST00000217958
4b
ENSE00001423035
X:107331082-107330916
167
PSD10_HUMAN
121-176
56
1
A:121-176
56
1.5e
ENST00000217958
5e
ENSE00001764642
X:107328357-107327437
921
PSD10_HUMAN
176-226
51
1
A:176-226
51
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1tr4a_ (A:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
26S proteasome non-ATPase regulatory subunit 10, gankyrin
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1tr4a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1tr4A00 (A:1-226)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
1a
1tr4A00
A:1-226
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Ank_1tr4A01 (A:171-203)
1b: PFAM_Ank_1tr4A02 (A:171-203)
1c: PFAM_Ank_1tr4A03 (A:171-203)
1d: PFAM_Ank_1tr4A04 (A:171-203)
1e: PFAM_Ank_1tr4A05 (A:171-203)
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Clan
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Ank
(35)
Family
:
Ank
(23)
Homo sapiens (Human)
(14)
1a
Ank-1tr4A01
A:171-203
1b
Ank-1tr4A02
A:171-203
1c
Ank-1tr4A03
A:171-203
1d
Ank-1tr4A04
A:171-203
1e
Ank-1tr4A05
A:171-203
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