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1TR0
Asym. Unit
Info
Asym.Unit (486 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (241 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BOILING STABLE PROTEIN SP1
Authors
:
O. Almog, A. Gonzalez, O. Sofer, O. Dgany, O. Shoseyov
Date
:
18 Jun 04 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,R,S,T,U,V,W,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,R,S,T,U,V,W,X,Y (1x)
Keywords
:
Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Dgany, A. Gonzalez, O. Sofer, W. Wang, G. Zolotnitsky, A. Wolf, Y. Shoham, A. Altman, S. G. Wolf, O. Shoseyov, O. Almog
The Structural Basis Of The Thermostability Of Sp1, A Novel Plant (Populus Tremula) Boiling Stable Protein
J. Biol. Chem. V. 279 51516 2004
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
24
Ligand/Ion
GLYCEROL
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:11 , TYR A:33 , TYR A:80 , ARG A:100 , VAL A:102 , HOH A:4239 , HOH B:4316
BINDING SITE FOR RESIDUE GOL A 4120
02
AC2
SOFTWARE
HIS B:11 , TYR B:33 , TYR B:80 , ARG B:100 , HOH B:4262
BINDING SITE FOR RESIDUE GOL B 4220
03
AC3
SOFTWARE
HIS C:11 , TYR C:33 , TYR C:80 , LEU C:86 , ARG C:100 , VAL C:102 , HOH D:4450
BINDING SITE FOR RESIDUE GOL C 4320
04
AC4
SOFTWARE
HOH C:4395 , HIS D:11 , TYR D:33 , TYR D:80 , ARG D:100 , HOH D:4560
BINDING SITE FOR RESIDUE GOL D 4420
05
AC5
SOFTWARE
HIS E:11 , LEU E:13 , TYR E:33 , TYR E:80 , ARG E:100 , VAL E:102 , HOH E:4569
BINDING SITE FOR RESIDUE GOL E 4520
06
AC6
SOFTWARE
HIS F:11 , TYR F:33 , TYR F:80 , ARG F:100 , VAL F:102 , HOH F:4700
BINDING SITE FOR RESIDUE GOL F 4620
07
AC7
SOFTWARE
HIS G:11 , TYR G:33 , TYR G:80 , LEU G:86 , ARG G:100 , VAL G:102 , HOH G:4766
BINDING SITE FOR RESIDUE GOL G 4720
08
AC8
SOFTWARE
HOH G:4774 , HIS H:11 , LEU H:13 , TYR H:33 , TYR H:80 , ARG H:100 , VAL H:102
BINDING SITE FOR RESIDUE GOL H 4820
09
AC9
SOFTWARE
HIS I:11 , LEU I:13 , TYR I:33 , TYR I:80 , ARG I:100 , VAL I:102 , HOH J:5160
BINDING SITE FOR RESIDUE GOL I 4920
10
BC1
SOFTWARE
HOH I:4999 , HIS J:11 , LEU J:13 , TYR J:33 , TYR J:80 , ARG J:100 , VAL J:102
BINDING SITE FOR RESIDUE GOL J 5120
11
BC2
SOFTWARE
HIS K:11 , LEU K:13 , TYR K:33 , TYR K:80 , ARG K:100 , HOH K:5250
BINDING SITE FOR RESIDUE GOL K 5220
12
BC3
SOFTWARE
HOH K:5277 , HIS L:11 , LEU L:13 , TYR L:33 , TYR L:80 , ARG L:100
BINDING SITE FOR RESIDUE GOL L 5320
13
BC4
SOFTWARE
HIS M:11 , LEU M:13 , TYR M:33 , TYR M:80 , ARG M:100 , VAL M:102 , HOH N:6287
BINDING SITE FOR RESIDUE GOL M 6120
14
BC5
SOFTWARE
HIS N:11 , TYR N:33 , TYR N:80 , ARG N:100 , VAL N:102 , HOH N:6312
BINDING SITE FOR RESIDUE GOL N 6220
15
BC6
SOFTWARE
HIS O:11 , TYR O:33 , TYR O:80 , ARG O:100 , VAL O:102 , HOH P:6472
BINDING SITE FOR RESIDUE GOL O 6320
16
BC7
SOFTWARE
HIS P:11 , TYR P:33 , TYR P:80 , ARG P:100 , VAL P:102 , HOH P:6470
BINDING SITE FOR RESIDUE GOL P 6420
17
BC8
SOFTWARE
HIS R:11 , LEU R:13 , TYR R:33 , TYR R:80 , ARG R:100 , VAL R:102 , HOH R:6588 , HOH R:6656 , HOH R:6657
BINDING SITE FOR RESIDUE GOL R 6520
18
BC9
SOFTWARE
HOH R:6596 , HIS S:11 , LEU S:13 , TYR S:33 , TYR S:80 , ARG S:100 , VAL S:102
BINDING SITE FOR RESIDUE GOL S 6620
19
CC1
SOFTWARE
HIS T:11 , TYR T:33 , TYR T:80 , ARG T:100 , VAL T:102 , HOH U:6886
BINDING SITE FOR RESIDUE GOL T 6720
20
CC2
SOFTWARE
HOH T:6748 , HIS U:11 , LEU U:13 , TYR U:33 , TYR U:80 , ARG U:100 , HOH U:6941
BINDING SITE FOR RESIDUE GOL U 6820
21
CC3
SOFTWARE
HIS V:11 , TYR V:33 , TYR V:80 , ARG V:100 , VAL V:102 , HOH W:7173
BINDING SITE FOR RESIDUE GOL V 6920
22
CC4
SOFTWARE
HIS W:11 , TYR W:33 , TYR W:80 , ARG W:100 , VAL W:102 , HOH W:7164
BINDING SITE FOR RESIDUE GOL W 7120
23
CC5
SOFTWARE
HIS X:11 , TYR X:33 , TYR X:80 , ARG X:100 , VAL X:102 , HOH Y:7424
BINDING SITE FOR RESIDUE GOL X 7220
24
CC6
SOFTWARE
HIS Y:11 , TYR Y:33 , TYR Y:80 , ARG Y:100 , HOH Y:7377
BINDING SITE FOR RESIDUE GOL Y 7320
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d1tr0a_ (A:)
1b: SCOP_d1tr0b_ (B:)
1c: SCOP_d1tr0k_ (K:)
1d: SCOP_d1tr0l_ (L:)
1e: SCOP_d1tr0m_ (M:)
1f: SCOP_d1tr0n_ (N:)
1g: SCOP_d1tr0o_ (O:)
1h: SCOP_d1tr0p_ (P:)
1i: SCOP_d1tr0r_ (R:)
1j: SCOP_d1tr0s_ (S:)
1k: SCOP_d1tr0t_ (T:)
1l: SCOP_d1tr0u_ (U:)
1m: SCOP_d1tr0c_ (C:)
1n: SCOP_d1tr0v_ (V:)
1o: SCOP_d1tr0w_ (W:)
1p: SCOP_d1tr0x_ (X:)
1q: SCOP_d1tr0y_ (Y:)
1r: SCOP_d1tr0d_ (D:)
1s: SCOP_d1tr0e_ (E:)
1t: SCOP_d1tr0f_ (F:)
1u: SCOP_d1tr0g_ (G:)
1v: SCOP_d1tr0h_ (H:)
1w: SCOP_d1tr0i_ (I:)
1x: SCOP_d1tr0j_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Dimeric alpha+beta barrel
(122)
Family
:
Plant stress-induced protein
(6)
Protein domain
:
Boiling stable protein 1
(2)
European aspen (Populus tremula) [TaxId: 113636]
(2)
1a
d1tr0a_
A:
1b
d1tr0b_
B:
1c
d1tr0k_
K:
1d
d1tr0l_
L:
1e
d1tr0m_
M:
1f
d1tr0n_
N:
1g
d1tr0o_
O:
1h
d1tr0p_
P:
1i
d1tr0r_
R:
1j
d1tr0s_
S:
1k
d1tr0t_
T:
1l
d1tr0u_
U:
1m
d1tr0c_
C:
1n
d1tr0v_
V:
1o
d1tr0w_
W:
1p
d1tr0x_
X:
1q
d1tr0y_
Y:
1r
d1tr0d_
D:
1s
d1tr0e_
E:
1t
d1tr0f_
F:
1u
d1tr0g_
G:
1v
d1tr0h_
H:
1w
d1tr0i_
I:
1x
d1tr0j_
J:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1tr0A00 (A:3-108)
1b: CATH_1tr0B00 (B:3-108)
1c: CATH_1tr0K00 (K:3-108)
1d: CATH_1tr0L00 (L:3-108)
1e: CATH_1tr0M00 (M:3-108)
1f: CATH_1tr0N00 (N:3-108)
1g: CATH_1tr0O00 (O:3-108)
1h: CATH_1tr0P00 (P:3-108)
1i: CATH_1tr0R00 (R:3-108)
1j: CATH_1tr0S00 (S:3-108)
1k: CATH_1tr0T00 (T:3-108)
1l: CATH_1tr0U00 (U:3-108)
1m: CATH_1tr0C00 (C:3-108)
1n: CATH_1tr0V00 (V:3-108)
1o: CATH_1tr0W00 (W:3-108)
1p: CATH_1tr0X00 (X:3-108)
1q: CATH_1tr0Y00 (Y:3-108)
1r: CATH_1tr0D00 (D:3-108)
1s: CATH_1tr0E00 (E:3-108)
1t: CATH_1tr0F00 (F:3-108)
1u: CATH_1tr0G00 (G:3-108)
1v: CATH_1tr0H00 (H:3-108)
1w: CATH_1tr0I00 (I:3-108)
1x: CATH_1tr0J00 (J:3-108)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.900, no name defined]
(47)
Populus tremula. Organism_taxid: 113636
(2)
1a
1tr0A00
A:3-108
1b
1tr0B00
B:3-108
1c
1tr0K00
K:3-108
1d
1tr0L00
L:3-108
1e
1tr0M00
M:3-108
1f
1tr0N00
N:3-108
1g
1tr0O00
O:3-108
1h
1tr0P00
P:3-108
1i
1tr0R00
R:3-108
1j
1tr0S00
S:3-108
1k
1tr0T00
T:3-108
1l
1tr0U00
U:3-108
1m
1tr0C00
C:3-108
1n
1tr0V00
V:3-108
1o
1tr0W00
W:3-108
1p
1tr0X00
X:3-108
1q
1tr0Y00
Y:3-108
1r
1tr0D00
D:3-108
1s
1tr0E00
E:3-108
1t
1tr0F00
F:3-108
1u
1tr0G00
G:3-108
1v
1tr0H00
H:3-108
1w
1tr0I00
I:3-108
1x
1tr0J00
J:3-108
[
close CATH info
]
Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_Dabb_1tr0Y01 (Y:9-107)
1b: PFAM_Dabb_1tr0Y02 (Y:9-107)
1c: PFAM_Dabb_1tr0Y03 (Y:9-107)
1d: PFAM_Dabb_1tr0Y04 (Y:9-107)
1e: PFAM_Dabb_1tr0Y05 (Y:9-107)
1f: PFAM_Dabb_1tr0Y06 (Y:9-107)
1g: PFAM_Dabb_1tr0Y07 (Y:9-107)
1h: PFAM_Dabb_1tr0Y08 (Y:9-107)
1i: PFAM_Dabb_1tr0Y09 (Y:9-107)
1j: PFAM_Dabb_1tr0Y10 (Y:9-107)
1k: PFAM_Dabb_1tr0Y11 (Y:9-107)
1l: PFAM_Dabb_1tr0Y12 (Y:9-107)
1m: PFAM_Dabb_1tr0Y13 (Y:9-107)
1n: PFAM_Dabb_1tr0Y14 (Y:9-107)
1o: PFAM_Dabb_1tr0Y15 (Y:9-107)
1p: PFAM_Dabb_1tr0Y16 (Y:9-107)
1q: PFAM_Dabb_1tr0Y17 (Y:9-107)
1r: PFAM_Dabb_1tr0Y18 (Y:9-107)
1s: PFAM_Dabb_1tr0Y19 (Y:9-107)
1t: PFAM_Dabb_1tr0Y20 (Y:9-107)
1u: PFAM_Dabb_1tr0Y21 (Y:9-107)
1v: PFAM_Dabb_1tr0Y22 (Y:9-107)
1w: PFAM_Dabb_1tr0Y23 (Y:9-107)
1x: PFAM_Dabb_1tr0Y24 (Y:9-107)
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Clans
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)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Dim_A_B_barrel
(36)
Family
:
Dabb
(5)
Populus tremula (European aspen)
(2)
1a
Dabb-1tr0Y01
Y:9-107
1b
Dabb-1tr0Y02
Y:9-107
1c
Dabb-1tr0Y03
Y:9-107
1d
Dabb-1tr0Y04
Y:9-107
1e
Dabb-1tr0Y05
Y:9-107
1f
Dabb-1tr0Y06
Y:9-107
1g
Dabb-1tr0Y07
Y:9-107
1h
Dabb-1tr0Y08
Y:9-107
1i
Dabb-1tr0Y09
Y:9-107
1j
Dabb-1tr0Y10
Y:9-107
1k
Dabb-1tr0Y11
Y:9-107
1l
Dabb-1tr0Y12
Y:9-107
1m
Dabb-1tr0Y13
Y:9-107
1n
Dabb-1tr0Y14
Y:9-107
1o
Dabb-1tr0Y15
Y:9-107
1p
Dabb-1tr0Y16
Y:9-107
1q
Dabb-1tr0Y17
Y:9-107
1r
Dabb-1tr0Y18
Y:9-107
1s
Dabb-1tr0Y19
Y:9-107
1t
Dabb-1tr0Y20
Y:9-107
1u
Dabb-1tr0Y21
Y:9-107
1v
Dabb-1tr0Y22
Y:9-107
1w
Dabb-1tr0Y23
Y:9-107
1x
Dabb-1tr0Y24
Y:9-107
[
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