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1TQ9
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
NON-COVALENT SWAPPED DIMER OF BOVINE SEMINAL RIBONUCLEASE IN COMPLEX WITH 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE
Authors
:
F. Sica, A. Di Fiore, A. Merlino, L. Mazzarella
Date
:
17 Jun 04 (Deposition) - 14 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Dinucleotide Complex, Cytotoxic Action, Hydrolase
(Keyword Search:
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Reference
:
F. Sica, A. Di Fiore, A. Merlino, L. Mazzarella
Structure And Stability Of The Non-Covalent Swapped Dimer Of Bovine Seminal Ribonuclease: An Enzyme Tailored To Evade Ribonuclease Protein Inhibitor
J. Biol. Chem. V. 279 36753 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE... (CPAa)
1b: 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE... (CPAb)
2a: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMa)
2b: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMb)
2c: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMc)
2d: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CPA
2
Ligand/Ion
2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE
2
YCM
4
Mod. Amino Acid
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:41 , VAL A:43 , ASN A:44 , THR A:45 , CYS A:65 , GLN A:69 , ASN A:71 , ALA A:109 , HIS A:119 , PHE A:120 , HOH A:202 , LYS B:7 , GLN B:11 , HIS B:12 , ASN B:67 , GLY B:68 , GLN B:69 , HOH B:157
BINDING SITE FOR RESIDUE CPA A 126
2
AC2
SOFTWARE
LYS A:7 , GLN A:11 , HIS A:12 , ASN A:67 , GLY A:68 , GLN A:69 , LYS B:41 , VAL B:43 , ASN B:44 , THR B:45 , CYS B:65 , GLN B:69 , ASN B:71 , ALA B:109 , HIS B:119 , PHE B:120 , ASP B:121 , HOH B:156 , HOH B:236
BINDING SITE FOR RESIDUE CPA B 626
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:40-46,B:40-46)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNS_BOVIN
66-72
2
A:40-46
B:40-46
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Exons
(1, 2)
Info
All Exons
Exon 1.3b (A:1-124 | B:1-124)
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENSBTAT00000036229
2
ENSBTAE00000284222
chr10:
25625986-25626024
39
RNS_BOVIN
-
0
0
-
-
1.3b
ENSBTAT00000036229
3b
ENSBTAE00000284221
chr10:
25626721-25627530
810
RNS_BOVIN
1-159
159
2
A:1-124
B:1-124
124
124
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tq9a_ (A:)
1b: SCOP_d1tq9b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Seminal ribonucleasease
(17)
Cow (Bos taurus) [TaxId: 9913]
(17)
1a
d1tq9a_
A:
1b
d1tq9b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tq9A00 (A:1-124)
1b: CATH_1tq9B00 (B:1-124)
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)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Cattle (Bos taurus)
(152)
1a
1tq9A00
A:1-124
1b
1tq9B00
B:1-124
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RnaseA_1tq9B01 (B:1-121)
1b: PFAM_RnaseA_1tq9B02 (B:1-121)
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(
)
Clan
:
no clan defined [family: RnaseA]
(125)
Family
:
RnaseA
(125)
Bos taurus (Bovine)
(107)
1a
RnaseA-1tq9B01
B:1-121
1b
RnaseA-1tq9B02
B:1-121
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Asymmetric Unit 1
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Asym.Unit (49 KB)
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