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1TPX
Asym. Unit
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Asym.Unit (91 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
OVINE RECOMBINANT PRP(114-234), ARQ VARIANT IN COMPLEX WITH THE FAB OF THE VRQ14 ANTIBODY
Authors
:
F. Eghiaian, J. Grosclaude, S. Lesceu, P. Debey, B. Doublet, E. Treguer, H. Rezaei, M. Knossow
Date
:
16 Jun 04 (Deposition) - 06 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Prion, Antibody, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Eghiaian, J. Grosclaude, S. Lesceu, P. Debey, B. Doublet, E. Treguer, H. Rezaei, M. Knossow
Insight Into The Prpc -> Prpsc Conversion From The Structures Of Antibody-Bound Ovine Prion Scrapie-Susceptibility Variants.
Proc. Natl. Acad. Sci. Usa V. 101 10254 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PRIO_SHEEP_002 (A136V, chain A, )
2: VAR_PRIO_SHEEP_003 (M137T, chain A, )
3: VAR_PRIO_SHEEP_004 (L141F, chain A, )
4: VAR_PRIO_SHEEP_005 (R154H, chain A, )
5: VAR_PRIO_SHEEP_006 (Q171H, chain A, )
6: VAR_PRIO_SHEEP_007 (Q171Q, chain A, )
7: VAR_PRIO_SHEEP_008 (R211Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PRIO_SHEEP_002
*
A
136
V
PRIO_SHEEP
---
---
A
A
136
V
2
UniProt
VAR_PRIO_SHEEP_003
*
M
137
T
PRIO_SHEEP
---
---
A
M
137
T
3
UniProt
VAR_PRIO_SHEEP_004
*
L
141
F
PRIO_SHEEP
---
---
A
L
141
F
4
UniProt
VAR_PRIO_SHEEP_005
*
R
154
H
PRIO_SHEEP
---
---
A
R
154
H
5
UniProt
VAR_PRIO_SHEEP_006
*
R
171
H
PRIO_SHEEP
---
---
A
Q
171
H
6
UniProt
VAR_PRIO_SHEEP_007
*
R
171
Q
PRIO_SHEEP
---
---
A
Q
171
Q
7
UniProt
VAR_PRIO_SHEEP_008
*
R
211
Q
PRIO_SHEEP
---
---
A
R
211
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRION_2 (A:203-221)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRION_2
PS00706
Prion protein signature 2.
PRIO_SHEEP
203-221
1
A:203-221
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 5)
Info
All SCOP Domains
1a: SCOP_d1tpxb2 (B:114-223)
1b: SCOP_d1tpxc2 (C:108-214)
2a: SCOP_d1tpxb1 (B:1-113)
2b: SCOP_d1tpxc1 (C:1-107)
3a: SCOP_d1tpxa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1tpxb2
B:114-223
1b
d1tpxc2
C:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(34)
2a
d1tpxb1
B:1-113
2b
d1tpxc1
C:1-107
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Prion-like
(73)
Superfamily
:
Prion-like
(73)
Family
:
Prion-like
(73)
Protein domain
:
Prion protein domain
(42)
Sheep (Ovis aries) [TaxId: 9940]
(6)
3a
d1tpxa_
A:
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1tpxA00 (A:127-228)
2a: CATH_1tpxC02 (C:109-214)
2b: CATH_1tpxB01 (B:1-113)
2c: CATH_1tpxC01 (C:1-108)
2d: CATH_1tpxB02 (B:114-223)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Major Prion Protein
(62)
Homologous Superfamily
:
Major Prion Protein
(62)
Sheep (Ovis aries)
(6)
1a
1tpxA00
A:127-228
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Sheep (Ovis aries)
(4)
2a
1tpxC02
C:109-214
2b
1tpxB01
B:1-113
2c
1tpxC01
C:1-108
2d
1tpxB02
B:114-223
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Prion_1tpxA01 (A:137-228)
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Clan
:
no clan defined [family: Prion]
(32)
Family
:
Prion
(32)
Ovis aries (Sheep)
(7)
1a
Prion-1tpxA01
A:137-228
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