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1TPH
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
1.8 ANGSTROMS CRYSTAL STRUCTURE OF WILD TYPE CHICKEN TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX
Authors
:
Z. Zhang, S. Sugio, E. A. Komives, K. D. Liu, J. R. Knowles, G. A. Petsko, D. Ringe
Date
:
22 Dec 93 (Deposition) - 30 Apr 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : 1,2
Biol. Unit 1: 1,2 (1x)
Keywords
:
Triosephosphate Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, S. Sugio, E. A. Komives, K. D. Liu, J. R. Knowles, G. A. Petsko, D. Ringe
Crystal Structure Of Recombinant Chicken Triosephosphate Isomerase-Phosphoglycolohydroxamate Complex At 1. 8-A Resolution.
Biochemistry V. 33 2830 1994
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHa)
1b: PHOSPHOGLYCOLOHYDROXAMIC ACID (PGHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PGH
2
Ligand/Ion
PHOSPHOGLYCOLOHYDROXAMIC ACID
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: ACT (UNKNOWN)
4: BCT (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN 1:11 , LYS 1:13 , HIS 1:95 , GLU 1:165 , ALA 1:169 , ILE 1:170 , GLY 1:171 , GLY 1:210 , SER 1:211 , LEU 1:230 , GLY 1:232 , GLY 1:233 , HOH 1:348 , HOH 1:359 , HOH 1:382 , HOH 1:383
BINDING SITE FOR RESIDUE PGH 1 250
2
AC2
SOFTWARE
ASN 2:11 , LYS 2:13 , HIS 2:95 , GLU 2:165 , ALA 2:169 , ILE 2:170 , GLY 2:171 , GLY 2:210 , SER 2:211 , LEU 2:230 , GLY 2:232 , GLY 2:233 , HOH 2:405 , HOH 2:415 , HOH 2:417 , HOH 2:518
BINDING SITE FOR RESIDUE PGH 2 250
3
ACT
UNKNOWN
GLU 1:165 , HIS 1:95 , SER 1:96 , LYS 1:13
NULL
4
BCT
UNKNOWN
GLU 2:165 , HIS 2:95 , SER 2:96 , LYS 2:13
NULL
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TIM_2 (1:5-246,2:5-246)
2: TIM_1 (1:163-173,2:163-173)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TIM_2
PS51440
Triosephosphate isomerase (TIM) family profile.
TPIS_CHICK
5-246
2
1:5-246
2:5-246
2
TIM_1
PS00171
Triosephosphate isomerase active site.
TPIS_CHICK
163-173
2
1:163-173
2:163-173
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (1:4-38 | 2:4-38)
Exon 1.2 (1:38-79 | 2:38-79)
Exon 1.3 (1:79-107 | 2:79-107)
Exon 1.4 (1:108-152 | 2:108-152)
Exon 1.5 (1:152-180 | 2:152-180)
Exon 1.6 (1:181-210 | 2:181-210)
Exon 1.7 (1:210-248 | 2:210-248)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000023442
1
ENSGALE00000242044
chr1:
80431223-80431451
229
TPIS_CHICK
1-38
38
2
1:4-38
2:4-38
35
35
1.2
ENSGALT00000023442
2
ENSGALE00000153292
chr1:
80432287-80432410
124
TPIS_CHICK
38-79
42
2
1:38-79
2:38-79
42
42
1.3
ENSGALT00000023442
3
ENSGALE00000153290
chr1:
80432505-80432589
85
TPIS_CHICK
79-107
29
2
1:79-107
2:79-107
29
29
1.4
ENSGALT00000023442
4
ENSGALE00000153291
chr1:
80432725-80432857
133
TPIS_CHICK
108-152
45
2
1:108-152
2:108-152
45
45
1.5
ENSGALT00000023442
5
ENSGALE00000153294
chr1:
80433088-80433173
86
TPIS_CHICK
152-180
29
2
1:152-180
2:152-180
29
29
1.6
ENSGALT00000023442
6
ENSGALE00000153293
chr1:
80433324-80433411
88
TPIS_CHICK
181-210
30
2
1:181-210
2:181-210
30
30
1.7
ENSGALT00000023442
7
ENSGALE00000153295
chr1:
80433666-80434223
558
TPIS_CHICK
210-248
39
2
1:210-248
2:210-248
39
39
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tph1_ (1:)
1b: SCOP_d1tph2_ (2:)
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)
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)
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)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Triosephosphate isomerase (TIM)
(148)
Family
:
Triosephosphate isomerase (TIM)
(128)
Protein domain
:
Triosephosphate isomerase
(126)
Chicken (Gallus gallus) [TaxId: 9031]
(16)
1a
d1tph1_
1:
1b
d1tph2_
2:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tph100 (1:4-248)
1b: CATH_1tph200 (2:4-248)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Chicken (Gallus gallus)
(18)
1a
1tph100
1:4-248
1b
1tph200
2:4-248
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