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1TOX
Asym. Unit
Info
Asym.Unit (173 KB)
Biol.Unit 1 (168 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (169 KB)
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(1)
Title
:
DIPHTHERIA TOXIN DIMER COMPLEXED WITH NAD
Authors
:
C. E. Bell, D. Eisenberg
Date
:
06 Oct 95 (Deposition) - 10 Jun 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (1x)
Biol. Unit 3: B (2x)
Keywords
:
Toxin, Adp-Ribosylation, Glucosyltransferase, Transferase, Nad
(Keyword Search:
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)
Reference
:
C. E. Bell, D. Eisenberg
Crystal Structure Of Diphtheria Toxin Bound To Nicotinamide Adenine Dinucleotide.
Biochemistry V. 35 1137 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: CAA (UNKNOWN)
4: CAB (UNKNOWN)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:21 , GLY A:22 , THR A:23 , GLY A:34 , ILE A:35 , GLN A:36 , TYR A:54 , SER A:55 , TYR A:65 , GLU A:148 , TRP A:153 , ARG A:458 , HOH A:649 , HOH A:673 , HOH A:683
BINDING SITE FOR RESIDUE NAD A 536
2
AC2
SOFTWARE
HIS B:21 , GLY B:22 , THR B:23 , TYR B:27 , GLY B:34 , ILE B:35 , GLN B:36 , TYR B:54 , TYR B:65 , GLU B:148 , HOH B:612
BINDING SITE FOR RESIDUE NAD B 536
3
CAA
UNKNOWN
GLU A:148
NULL
4
CAB
UNKNOWN
GLU B:148
NULL
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1toxa1 (A:381-535)
1b: SCOP_d1toxb1 (B:381-535)
2a: SCOP_d1toxa2 (A:1-187)
2b: SCOP_d1toxb2 (B:1-187)
3a: SCOP_d1toxa3 (A:200-380)
3b: SCOP_d1toxb3 (B:200-380)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Diphtheria toxin, C-terminal domain
(9)
Family
:
Diphtheria toxin, C-terminal domain
(7)
Protein domain
:
Diphtheria toxin, C-terminal domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
1a
d1toxa1
A:381-535
1b
d1toxb1
B:381-535
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
Diphtheria toxin, N-terminal domain
(8)
Corynebacterium diphtheriae [TaxId: 1717]
(8)
2a
d1toxa2
A:1-187
2b
d1toxb2
B:1-187
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Diphtheria toxin, middle domain
(9)
Family
:
Diphtheria toxin, middle domain
(7)
Protein domain
:
Diphtheria toxin, middle domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
3a
d1toxa3
A:200-380
3b
d1toxb3
B:200-380
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1toxA01 (A:1-187)
1b: CATH_1toxB01 (B:1-187)
2a: CATH_1toxA02 (A:200-379)
2b: CATH_1toxB02 (B:200-379)
3a: CATH_1toxA03 (A:380-533)
3b: CATH_1toxB03 (B:380-533)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Diphtheria Toxin; domain 1
(22)
Homologous Superfamily
:
Diphtheria Toxin, domain 1
(22)
Corynephage beta. Organism_taxid: 10703.
(2)
1a
1toxA01
A:1-187
1b
1toxB01
B:1-187
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Diphtheria toxin, middle domain
(6)
Corynephage beta. Organism_taxid: 10703.
(2)
2a
1toxA02
A:200-379
2b
1toxB02
B:200-379
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.700, no name defined]
(6)
Corynephage beta. Organism_taxid: 10703.
(2)
3a
1toxA03
A:380-533
3b
1toxB03
B:380-533
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Diphtheria_C_1toxB01 (B:1-187)
1b: PFAM_Diphtheria_C_1toxB02 (B:1-187)
2a: PFAM_Diphtheria_R_1toxB03 (B:381-534)
2b: PFAM_Diphtheria_R_1toxB04 (B:381-534)
3a: PFAM_Diphtheria_T_1toxB05 (B:200-379)
3b: PFAM_Diphtheria_T_1toxB06 (B:200-379)
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)
Clan
:
ADP-ribosyl
(56)
Family
:
Diphtheria_C
(4)
Corynephage beta
(4)
1a
Diphtheria_C-1toxB01
B:1-187
1b
Diphtheria_C-1toxB02
B:1-187
Clan
:
no clan defined [family: Diphtheria_R]
(4)
Family
:
Diphtheria_R
(4)
Corynephage beta
(4)
2a
Diphtheria_R-1toxB03
B:381-534
2b
Diphtheria_R-1toxB04
B:381-534
Clan
:
no clan defined [family: Diphtheria_T]
(4)
Family
:
Diphtheria_T
(4)
Corynephage beta
(4)
3a
Diphtheria_T-1toxB05
B:200-379
3b
Diphtheria_T-1toxB06
B:200-379
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Asym.Unit (173 KB)
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