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1TOC
Biol. Unit 1
Info
Asym.Unit (278 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (71 KB)
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(1)
Title
:
STRUCTURE OF SERINE PROTEINASE
Authors
:
A. Van De Locht, R. Huber, W. Bode
Date
:
20 Jul 96 (Deposition) - 23 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,R,S,T,U
Biol. Unit 1: A,B,R (1x)
Biol. Unit 2: C,D,S (1x)
Biol. Unit 3: G,H,U (1x)
Biol. Unit 4: E,F,T (1x)
Keywords
:
Vitamin K, Zymogen, Gamma-Carboxyglutamic Acid, Acute Phase, Liver, Hydrolase, Serine Protease Kunitz-Like Inhibitor, Kringle, Signal, Complex (Hydrolase/Inhibitor) Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Van De Locht, M. T. Stubbs, W. Bode, T. Friedrich, C. Bollschweiler, W. Hoffken, R. Huber
The Ornithodorin-Thrombin Crystal Structure, A Key To The Tap Enigma?
Embo J. V. 15 6011 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
B
D
222
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:16-243)
2: TRYPSIN_HIS (B:53-58)
3: TRYPSIN_SER (B:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
1
B:16-243
-
-
-
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
1
B:53-58
-
-
-
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
1
B:189-200
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1toc_1 (A:,B:)
1b: SCOP_d1toc_2 (C:,D:)
1c: SCOP_d1toc_3 (E:,F:)
1d: SCOP_d1toc_4 (G:,H:)
2a: SCOP_d1tocr1 (R:1A-56)
2b: SCOP_d1tocr2 (R:57-119)
2c: SCOP_d1tocs1 (S:1A-56)
2d: SCOP_d1tocs2 (S:57-119)
2e: SCOP_d1toct1 (T:1A-56)
2f: SCOP_d1toct2 (T:57-119)
2g: SCOP_d1tocu1 (U:1A-56)
2h: SCOP_d1tocu2 (U:57-119)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Thrombin
(188)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1toc.1
A:,B:
1b
d1toc.2
C:,D:
1c
d1toc.3
E:,F:
1d
d1toc.4
G:,H:
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Soft tick anticoagulant proteins
(5)
Protein domain
:
Ornithodorin
(1)
Soft tick (Ornithodoros moubata) [TaxId: 6938]
(1)
2a
d1tocr1
R:1A-56
2b
d1tocr2
R:57-119
2c
d1tocs1
S:1A-56
2d
d1tocs2
S:57-119
2e
d1toct1
T:1A-56
2f
d1toct2
T:57-119
2g
d1tocu1
U:1A-56
2h
d1tocu2
U:57-119
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CATH Domains
(3, 20)
Info
all CATH domains
1a: CATH_1tocA00 (A:1B-14L)
1b: CATH_1tocC00 (C:1B-14L)
1c: CATH_1tocE00 (E:1B-14L)
1d: CATH_1tocG00 (G:1B-14L)
2a: CATH_1tocR02 (R:62-119)
2b: CATH_1tocU02 (U:62-119)
2c: CATH_1tocR01 (R:1-52)
2d: CATH_1tocS01 (S:1-52)
2e: CATH_1tocT01 (T:1-52)
2f: CATH_1tocU01 (U:1-52)
2g: CATH_1tocS02 (S:62-119)
2h: CATH_1tocT02 (T:62-119)
3a: CATH_1tocB02 (B:28-120,B:233-247)
3b: CATH_1tocD02 (D:28-120,D:233-247)
3c: CATH_1tocF02 (F:28-120,F:233-247)
3d: CATH_1tocH02 (H:28-120,H:233-247)
3e: CATH_1tocB01 (B:16-27,B:121-232)
3f: CATH_1tocD01 (D:16-27,D:121-232)
3g: CATH_1tocF01 (F:16-27,F:121-232)
3h: CATH_1tocH01 (H:16-27,H:121-232)
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)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Cattle (Bos taurus)
(17)
1a
1tocA00
A:1B-14L
1b
1tocC00
C:1B-14L
1c
1tocE00
E:1B-14L
1d
1tocG00
G:1B-14L
Topology
:
Factor Xa Inhibitor
(116)
Homologous Superfamily
:
Factor Xa Inhibitor
(116)
Cattle (Bos taurus)
(61)
2a
1tocR02
R:62-119
2b
1tocU02
U:62-119
2c
1tocR01
R:1-52
2d
1tocS01
S:1-52
2e
1tocT01
T:1-52
2f
1tocU01
U:1-52
2g
1tocS02
S:62-119
2h
1tocT02
T:62-119
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
3a
1tocB02
B:28-120,B:233-247
3b
1tocD02
D:28-120,D:233-247
3c
1tocF02
F:28-120,F:233-247
3d
1tocH02
H:28-120,H:233-247
3e
1tocB01
B:16-27,B:121-232
3f
1tocD01
D:16-27,D:121-232
3g
1tocF01
F:16-27,F:121-232
3h
1tocH01
H:16-27,H:121-232
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Trypsin_1tocH01 (H:16-238)
1b: PFAM_Trypsin_1tocH02 (H:16-238)
1c: PFAM_Trypsin_1tocH03 (H:16-238)
1d: PFAM_Trypsin_1tocH04 (H:16-238)
2a: PFAM_Kunitz_BPTI_1tocU01 (U:64-114)
2b: PFAM_Kunitz_BPTI_1tocU02 (U:64-114)
2c: PFAM_Kunitz_BPTI_1tocU03 (U:64-114)
2d: PFAM_Kunitz_BPTI_1tocU04 (U:64-114)
3a: PFAM_Thrombin_light_1tocG01 (G:1B-14L)
3b: PFAM_Thrombin_light_1tocG02 (G:1B-14L)
3c: PFAM_Thrombin_light_1tocG03 (G:1B-14L)
3d: PFAM_Thrombin_light_1tocG04 (G:1B-14L)
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Clans
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)
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)
Families
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Bos taurus (Bovine)
(190)
1a
Trypsin-1tocH01
H:16-238
1b
Trypsin-1tocH02
H:16-238
1c
Trypsin-1tocH03
H:16-238
1d
Trypsin-1tocH04
H:16-238
Clan
:
Protease_inhib
(47)
Family
:
Kunitz_BPTI
(45)
Ornithodoros moubata (Soft tick) (Argasid tick)
(4)
2a
Kunitz_BPTI-1tocU01
U:64-114
2b
Kunitz_BPTI-1tocU02
U:64-114
2c
Kunitz_BPTI-1tocU03
U:64-114
2d
Kunitz_BPTI-1tocU04
U:64-114
Clan
:
no clan defined [family: Thrombin_light]
(136)
Family
:
Thrombin_light
(136)
Bos taurus (Bovine)
(10)
3a
Thrombin_light-1tocG01
G:1B-14L
3b
Thrombin_light-1tocG02
G:1B-14L
3c
Thrombin_light-1tocG03
G:1B-14L
3d
Thrombin_light-1tocG04
G:1B-14L
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