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Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (103 KB)
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(1)
Title
:
STRUCTURE OF THE CYTOSOLIC CU,ZN SOD FROM S. MANSONI
Authors
:
R. M. F. Cardoso, C. H. T. P. Silva, A. P. Ulian De Araujo, T. Tanaka, M. Tanaka, R. C. Garratt
Date
:
12 Jun 04 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Beta-Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Cardoso, C. H. Silva, A. P. Ulian De Araujo, T. Tanaka, M. Tanaka, R. C. Garratt
Structure Of The Cytosolic Cu, Zn Superoxide Dismutase From Schistosoma Mansoni.
Acta Crystallogr. , Sect. D V. 60 1569 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CU
4
Ligand/Ion
COPPER (II) ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:62 , HIS A:70 , HIS A:79 , ASP A:82
BINDING SITE FOR RESIDUE ZN A 711
2
AC2
SOFTWARE
HIS A:45 , HIS A:47 , HIS A:62 , HIS A:119
BINDING SITE FOR RESIDUE CU A 712
3
AC3
SOFTWARE
HIS B:62 , HIS B:70 , HIS B:79 , ASP B:82
BINDING SITE FOR RESIDUE ZN B 721
4
AC4
SOFTWARE
HIS B:45 , HIS B:47 , HIS B:62 , HIS B:119
BINDING SITE FOR RESIDUE CU B 722
5
AC5
SOFTWARE
HIS C:62 , HIS C:70 , HIS C:79 , ASP C:82
BINDING SITE FOR RESIDUE ZN C 731
6
AC6
SOFTWARE
HIS C:45 , HIS C:47 , HIS C:62 , HIS C:119
BINDING SITE FOR RESIDUE CU C 732
7
AC7
SOFTWARE
HIS D:62 , HIS D:70 , HIS D:79 , ASP D:82
BINDING SITE FOR RESIDUE ZN D 741
8
AC8
SOFTWARE
HIS D:45 , HIS D:47 , HIS D:62 , HIS D:119
BINDING SITE FOR RESIDUE CU D 742
9
AC9
SOFTWARE
GLU B:22 , HIS B:29 , HOH B:832 , GLN C:68 , HOH C:822
BINDING SITE FOR RESIDUE ACT B 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (A:43-53,B:43-53,C:43-53,D:43-53)
2: SOD_CU_ZN_2 (A:137-147,B:137-147,C:137-147,D:13...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_SCHMA
43-53
4
A:43-53
B:43-53
C:43-53
D:43-53
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_SCHMA
137-148
4
A:137-147
B:137-147
C:137-147
D:137-147
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1to5a_ (A:)
1b: SCOP_d1to5b_ (B:)
1c: SCOP_d1to5c_ (C:)
1d: SCOP_d1to5d_ (D:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Blood fluke (Schistosoma mansoni) [TaxId: 6183]
(2)
1a
d1to5a_
A:
1b
d1to5b_
B:
1c
d1to5c_
C:
1d
d1to5d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1to5A00 (A:-3-153)
1b: CATH_1to5B00 (B:-3-153)
1c: CATH_1to5C00 (C:-3-153)
1d: CATH_1to5D00 (D:-3-153)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Schistosoma mansoni. Organism_taxid: 6183.
(2)
1a
1to5A00
A:-3-153
1b
1to5B00
B:-3-153
1c
1to5C00
C:-3-153
1d
1to5D00
D:-3-153
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Sod_Cu_1to5D01 (D:3-148)
1b: PFAM_Sod_Cu_1to5D02 (D:3-148)
1c: PFAM_Sod_Cu_1to5D03 (D:3-148)
1d: PFAM_Sod_Cu_1to5D04 (D:3-148)
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Clan
:
no clan defined [family: Sod_Cu]
(71)
Family
:
Sod_Cu
(71)
Schistosoma mansoni (Blood fluke)
(1)
1a
Sod_Cu-1to5D01
D:3-148
1b
Sod_Cu-1to5D02
D:3-148
1c
Sod_Cu-1to5D03
D:3-148
1d
Sod_Cu-1to5D04
D:3-148
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Asym.Unit (108 KB)
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Header - Biol.Unit 1
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