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1TND
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (61 KB)
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(1)
Title
:
THE 2.2 ANGSTROMS CRYSTAL STRUCTURE OF TRANSDUCIN-ALPHA COMPLEXED WITH GTP GAMMA S
Authors
:
J. P. Noel, H. E. Hamm, P. B. Sigler
Date
:
31 Mar 94 (Deposition) - 31 Jul 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Binding Protein(Gtp)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Noel, H. E. Hamm, P. B. Sigler
The 2. 2 A Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S.
Nature V. 366 654 1993
[
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
1c: CACODYLATE ION (CACc)
1d: CACODYLATE ION (CACd)
1e: CACODYLATE ION (CACe)
1f: CACODYLATE ION (CACf)
2a: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPa)
2b: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPb)
2c: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOP... (GSPc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAC
6
Ligand/Ion
CACODYLATE ION
2
GSP
3
Ligand/Ion
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
3
MG
3
Ligand/Ion
MAGNESIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:43 , THR A:177 , GSP A:351 , HOH A:359 , HOH A:361
BINDING SITE FOR RESIDUE MG A 352
02
AC2
SOFTWARE
CYS A:62
BINDING SITE FOR RESIDUE CAC A 353
03
AC3
SOFTWARE
CYS A:210
BINDING SITE FOR RESIDUE CAC A 354
04
AC4
SOFTWARE
SER B:43 , THR B:177 , GSP B:351 , HOH B:372 , HOH B:379
BINDING SITE FOR RESIDUE MG B 352
05
AC5
SOFTWARE
CYS B:62 , PRO B:165
BINDING SITE FOR RESIDUE CAC B 353
06
AC6
SOFTWARE
CYS B:210 , HOH B:432
BINDING SITE FOR RESIDUE CAC B 354
07
AC7
SOFTWARE
SER C:43 , THR C:177 , GSP C:351 , HOH C:382 , HOH C:383
BINDING SITE FOR RESIDUE MG C 352
08
AC8
SOFTWARE
CYS C:62 , PRO C:165
BINDING SITE FOR RESIDUE CAC C 353
09
AC9
SOFTWARE
CYS C:210
BINDING SITE FOR RESIDUE CAC C 354
10
BC1
SOFTWARE
GLU A:39 , SER A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , ASP A:146 , SER A:147 , LEU A:171 , ARG A:172 , SER A:173 , ARG A:174 , THR A:177 , GLY A:198 , GLY A:199 , ASN A:265 , LYS A:266 , ASP A:268 , VAL A:269 , CYS A:321 , ALA A:322 , THR A:323 , MG A:352 , HOH A:359 , HOH A:361 , HOH A:365 , HOH A:412 , HOH A:414 , HOH A:416
BINDING SITE FOR RESIDUE GSP A 351
11
BC2
SOFTWARE
GLY B:38 , GLU B:39 , SER B:40 , GLY B:41 , LYS B:42 , SER B:43 , THR B:44 , ASP B:146 , LEU B:171 , ARG B:172 , SER B:173 , ARG B:174 , THR B:177 , GLY B:198 , GLY B:199 , ASN B:265 , LYS B:266 , ASP B:268 , VAL B:269 , CYS B:321 , ALA B:322 , THR B:323 , MG B:352 , HOH B:372 , HOH B:373 , HOH B:379 , HOH B:405 , HOH B:474
BINDING SITE FOR RESIDUE GSP B 351
12
BC3
SOFTWARE
GLY C:38 , GLU C:39 , SER C:40 , GLY C:41 , LYS C:42 , SER C:43 , THR C:44 , ASP C:146 , SER C:147 , LEU C:171 , ARG C:172 , SER C:173 , ARG C:174 , THR C:177 , GLY C:198 , GLY C:199 , ASN C:265 , LYS C:266 , ASP C:268 , VAL C:269 , CYS C:321 , ALA C:322 , THR C:323 , MG C:352 , HOH C:383 , HOH C:384 , HOH C:431 , HOH C:432 , HOH C:447
BINDING SITE FOR RESIDUE GSP C 351
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(8, 24)
Info
All Exons
Exon 1.1 (A:27-36 | B:27-36 | C:27-36)
Exon 1.2 (A:36-50 | B:36-50 | C:36-50)
Exon 1.3 (A:50-97 | B:50-97 | C:50-97)
Exon 1.4 (A:98-150 | B:98-150 | C:98-150)
Exon 1.5 (A:150-193 | B:150-193 | C:150-193)
Exon 1.6 (A:193-236 | B:193-236 | C:193-236)
Exon 1.7 (A:237-288 | B:237-288 | C:237-288)
Exon 1.8 (A:288-349 | B:288-342 | C:288-342)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/1.9
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000023990
1
ENSBTAE00000247883
chr22:
51063839-51063597
243
GNAT1_BOVIN
1-36
36
3
A:27-36
B:27-36
C:27-36
10
10
10
1.2
ENSBTAT00000023990
2
ENSBTAE00000388493
chr22:
51062405-51062363
43
GNAT1_BOVIN
36-50
15
3
A:36-50
B:36-50
C:36-50
15
15
15
1.3
ENSBTAT00000023990
3
ENSBTAE00000247881
chr22:
51062224-51062083
142
GNAT1_BOVIN
50-97
48
3
A:50-97
B:50-97
C:50-97
48
48
48
1.4
ENSBTAT00000023990
4
ENSBTAE00000247880
chr22:
51061992-51061835
158
GNAT1_BOVIN
98-150
53
3
A:98-150
B:98-150
C:98-150
53
53
53
1.5
ENSBTAT00000023990
5
ENSBTAE00000195357
chr22:
51061741-51061613
129
GNAT1_BOVIN
150-193
44
3
A:150-193
B:150-193
C:150-193
44
44
44
1.6
ENSBTAT00000023990
6
ENSBTAE00000419260
chr22:
51061351-51061222
130
GNAT1_BOVIN
193-236
44
3
A:193-236
B:193-236
C:193-236
44
44
44
1.7
ENSBTAT00000023990
7
ENSBTAE00000195359
chr22:
51060899-51060746
154
GNAT1_BOVIN
237-288
52
3
A:237-288
B:237-288
C:237-288
52
52
52
1.8
ENSBTAT00000023990
8
ENSBTAE00000195360
chr22:
51060623-51060432
192
GNAT1_BOVIN
288-350
63
3
A:288-349
B:288-342
C:288-342
62
55
55
1.9
ENSBTAT00000023990
9
ENSBTAE00000195361
chr22:
51060077-51058825
1253
GNAT1_BOVIN
-
0
0
-
-
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1tnda1 (A:57-177)
1b: SCOP_d1tndb1 (B:57-177)
1c: SCOP_d1tndc1 (C:57-177)
2a: SCOP_d1tnda2 (A:27-56,A:178-349)
2b: SCOP_d1tndb2 (B:27-56,B:178-342)
2c: SCOP_d1tndc2 (C:27-56,C:178-342)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Cow (Bos taurus) [TaxId: 9913]
(18)
1a
d1tnda1
A:57-177
1b
d1tndb1
B:57-177
1c
d1tndc1
C:57-177
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Cow (Bos taurus) [TaxId: 9913]
(18)
2a
d1tnda2
A:27-56,A:178-349
2b
d1tndb2
B:27-56,B:178-342
2c
d1tndc2
C:27-56,C:178-342
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1tndA01 (A:27-57,A:177-347)
1b: CATH_1tndB01 (B:27-57,B:177-342)
1c: CATH_1tndC01 (C:27-57,C:177-342)
2a: CATH_1tndA02 (A:58-176)
2b: CATH_1tndB02 (B:58-176)
2c: CATH_1tndC02 (C:58-176)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (Bos taurus)
(17)
1a
1tndA01
A:27-57,A:177-347
1b
1tndB01
B:27-57,B:177-342
1c
1tndC01
C:27-57,C:177-342
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Cattle (Bos taurus)
(5)
2a
1tndA02
A:58-176
2b
1tndB02
B:58-176
2c
1tndC02
C:58-176
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_G_alpha_1tndC01 (C:27-342)
1b: PFAM_G_alpha_1tndC02 (C:27-342)
1c: PFAM_G_alpha_1tndC03 (C:27-342)
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Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Bos taurus (Bovine)
(8)
1a
G-alpha-1tndC01
C:27-342
1b
G-alpha-1tndC02
C:27-342
1c
G-alpha-1tndC03
C:27-342
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