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1TNB
Biol. Unit 1
Info
Asym.Unit (684 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (120 KB)
Biol.Unit 4 (118 KB)
Biol.Unit 5 (119 KB)
Biol.Unit 6 (122 KB)
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(1)
Title
:
RAT PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP ANALOG AND A SUBSTRATE KKSKTKCVIF PEPTIDE DERIVED FROM TC21
Authors
:
T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Date
:
11 Jun 04 (Deposition) - 02 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,M (1x)
Biol. Unit 2: C,D,N (1x)
Biol. Unit 3: E,F,O (1x)
Biol. Unit 4: G,H,P (1x)
Biol. Unit 5: I,J,Q (1x)
Biol. Unit 6: K,L,R (1x)
Keywords
:
Ggtase-I, Geranylgeranyltransferase Type-I, Geranylgeranyl Transferase, Prenyltransferase, Caax, Tc21, Lipid Modification, Prenylation, Substrate Selectivity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Crystallographic Analysis Of Caax Prenyltransferases Complexed With Substrates Defines Rules Of Protein Substrate Selectivity.
J. Mol. Biol. V. 343 417 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMa)
3b: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMb)
3c: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMc)
3d: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMd)
3e: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMe)
3f: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MES
-1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
MGM
1
Ligand/Ion
2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:269 , CYS B:271 , HIS B:321 , CYS M:7
BINDING SITE FOR RESIDUE ZN B 378
2
BC2
SOFTWARE
LYS A:164 , TYR A:166 , LYS A:198 , TYR A:200 , HIS A:201 , TYR B:126 , THR B:127 , ARG B:173 , HIS B:219 , ARG B:263 , LYS B:266 , TYR B:272 , TRP B:275 , ASN B:345 , HOH B:383 , HOH B:384 , HOH B:385 , HOH B:405 , HOH B:414 , VAL M:8
BINDING SITE FOR RESIDUE MGM B 379
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146,A:147-181,A:215-249,A:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_RAT
112-146
147-181
215-249
182-214
255-289
5
A:112-146
-
-
-
-
-
A:147-181
-
-
-
-
-
A:215-249
-
-
-
-
-
A:182-214
-
-
-
-
-
A:255-289
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1tnba_ (A:)
1b: SCOP_d1tnbc_ (C:)
1c: SCOP_d1tnbe_ (E:)
1d: SCOP_d1tnbg_ (G:)
1e: SCOP_d1tnbi_ (I:)
1f: SCOP_d1tnbk_ (K:)
2a: SCOP_d1tnbb_ (B:)
2b: SCOP_d1tnbd_ (D:)
2c: SCOP_d1tnbf_ (F:)
2d: SCOP_d1tnbh_ (H:)
2e: SCOP_d1tnbj_ (J:)
2f: SCOP_d1tnbl_ (L:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(51)
1a
d1tnba_
A:
1b
d1tnbc_
C:
1c
d1tnbe_
E:
1d
d1tnbg_
G:
1e
d1tnbi_
I:
1f
d1tnbk_
K:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(50)
2a
d1tnbb_
B:
2b
d1tnbd_
D:
2c
d1tnbf_
F:
2d
d1tnbh_
H:
2e
d1tnbj_
J:
2f
d1tnbl_
L:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1tnbA00 (A:55-368)
1b: CATH_1tnbC00 (C:55-368)
1c: CATH_1tnbE00 (E:55-368)
1d: CATH_1tnbG00 (G:55-368)
1e: CATH_1tnbI00 (I:55-368)
1f: CATH_1tnbK00 (K:55-368)
2a: CATH_1tnbB00 (B:18-363)
2b: CATH_1tnbD00 (D:18-363)
2c: CATH_1tnbF00 (F:18-363)
2d: CATH_1tnbH00 (H:18-363)
2e: CATH_1tnbJ00 (J:18-363)
2f: CATH_1tnbL00 (L:18-363)
View:
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)
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)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Norway rat (Rattus norvegicus)
(37)
1a
1tnbA00
A:55-368
1b
1tnbC00
C:55-368
1c
1tnbE00
E:55-368
1d
1tnbG00
G:55-368
1e
1tnbI00
I:55-368
1f
1tnbK00
K:55-368
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Norway rat (Rattus norvegicus)
(39)
2a
1tnbB00
B:18-363
2b
1tnbD00
D:18-363
2c
1tnbF00
F:18-363
2d
1tnbH00
H:18-363
2e
1tnbJ00
J:18-363
2f
1tnbL00
L:18-363
[
close CATH info
]
Pfam Domains
(3, 48)
Info
all PFAM domains
1a: PFAM_Prenyltrans_1tnbL01 (L:289-333)
1b: PFAM_Prenyltrans_1tnbL02 (L:289-333)
1c: PFAM_Prenyltrans_1tnbL03 (L:289-333)
1d: PFAM_Prenyltrans_1tnbL04 (L:289-333)
1e: PFAM_Prenyltrans_1tnbL05 (L:289-333)
1f: PFAM_Prenyltrans_1tnbL06 (L:289-333)
1g: PFAM_Prenyltrans_1tnbL07 (L:289-333)
1h: PFAM_Prenyltrans_1tnbL08 (L:289-333)
1i: PFAM_Prenyltrans_1tnbL09 (L:289-333)
1j: PFAM_Prenyltrans_1tnbL10 (L:289-333)
1k: PFAM_Prenyltrans_1tnbL11 (L:289-333)
1l: PFAM_Prenyltrans_1tnbL12 (L:289-333)
2a: PFAM_Prenyltrans_2_1tnbL13 (L:110-212)
2b: PFAM_Prenyltrans_2_1tnbL14 (L:110-212)
2c: PFAM_Prenyltrans_2_1tnbL15 (L:110-212)
2d: PFAM_Prenyltrans_2_1tnbL16 (L:110-212)
2e: PFAM_Prenyltrans_2_1tnbL17 (L:110-212)
2f: PFAM_Prenyltrans_2_1tnbL18 (L:110-212)
3a: PFAM_PPTA_1tnbK01 (K:258-288)
3b: PFAM_PPTA_1tnbK02 (K:258-288)
3c: PFAM_PPTA_1tnbK03 (K:258-288)
3d: PFAM_PPTA_1tnbK04 (K:258-288)
3e: PFAM_PPTA_1tnbK05 (K:258-288)
3f: PFAM_PPTA_1tnbK06 (K:258-288)
3g: PFAM_PPTA_1tnbK07 (K:258-288)
3h: PFAM_PPTA_1tnbK08 (K:258-288)
3i: PFAM_PPTA_1tnbK09 (K:258-288)
3j: PFAM_PPTA_1tnbK10 (K:258-288)
3k: PFAM_PPTA_1tnbK11 (K:258-288)
3l: PFAM_PPTA_1tnbK12 (K:258-288)
3m: PFAM_PPTA_1tnbK13 (K:258-288)
3n: PFAM_PPTA_1tnbK14 (K:258-288)
3o: PFAM_PPTA_1tnbK15 (K:258-288)
3p: PFAM_PPTA_1tnbK16 (K:258-288)
3q: PFAM_PPTA_1tnbK17 (K:258-288)
3r: PFAM_PPTA_1tnbK18 (K:258-288)
3s: PFAM_PPTA_1tnbK19 (K:258-288)
3t: PFAM_PPTA_1tnbK20 (K:258-288)
3u: PFAM_PPTA_1tnbK21 (K:258-288)
3v: PFAM_PPTA_1tnbK22 (K:258-288)
3w: PFAM_PPTA_1tnbK23 (K:258-288)
3x: PFAM_PPTA_1tnbK24 (K:258-288)
3y: PFAM_PPTA_1tnbK25 (K:258-288)
3z: PFAM_PPTA_1tnbK26 (K:258-288)
3aa: PFAM_PPTA_1tnbK27 (K:258-288)
3ab: PFAM_PPTA_1tnbK28 (K:258-288)
3ac: PFAM_PPTA_1tnbK29 (K:258-288)
3ad: PFAM_PPTA_1tnbK30 (K:258-288)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Prenyltrans
(49)
Rattus norvegicus (Rat)
(31)
1a
Prenyltrans-1tnbL01
L:289-333
1b
Prenyltrans-1tnbL02
L:289-333
1c
Prenyltrans-1tnbL03
L:289-333
1d
Prenyltrans-1tnbL04
L:289-333
1e
Prenyltrans-1tnbL05
L:289-333
1f
Prenyltrans-1tnbL06
L:289-333
1g
Prenyltrans-1tnbL07
L:289-333
1h
Prenyltrans-1tnbL08
L:289-333
1i
Prenyltrans-1tnbL09
L:289-333
1j
Prenyltrans-1tnbL10
L:289-333
1k
Prenyltrans-1tnbL11
L:289-333
1l
Prenyltrans-1tnbL12
L:289-333
Family
:
Prenyltrans_2
(47)
Rattus norvegicus (Rat)
(31)
2a
Prenyltrans_2-1tnbL13
L:110-212
2b
Prenyltrans_2-1tnbL14
L:110-212
2c
Prenyltrans_2-1tnbL15
L:110-212
2d
Prenyltrans_2-1tnbL16
L:110-212
2e
Prenyltrans_2-1tnbL17
L:110-212
2f
Prenyltrans_2-1tnbL18
L:110-212
Clan
:
no clan defined [family: PPTA]
(36)
Family
:
PPTA
(36)
Rattus norvegicus (Rat)
(31)
3a
PPTA-1tnbK01
K:258-288
3b
PPTA-1tnbK02
K:258-288
3c
PPTA-1tnbK03
K:258-288
3d
PPTA-1tnbK04
K:258-288
3e
PPTA-1tnbK05
K:258-288
3f
PPTA-1tnbK06
K:258-288
3g
PPTA-1tnbK07
K:258-288
3h
PPTA-1tnbK08
K:258-288
3i
PPTA-1tnbK09
K:258-288
3j
PPTA-1tnbK10
K:258-288
3k
PPTA-1tnbK11
K:258-288
3l
PPTA-1tnbK12
K:258-288
3m
PPTA-1tnbK13
K:258-288
3n
PPTA-1tnbK14
K:258-288
3o
PPTA-1tnbK15
K:258-288
3p
PPTA-1tnbK16
K:258-288
3q
PPTA-1tnbK17
K:258-288
3r
PPTA-1tnbK18
K:258-288
3s
PPTA-1tnbK19
K:258-288
3t
PPTA-1tnbK20
K:258-288
3u
PPTA-1tnbK21
K:258-288
3v
PPTA-1tnbK22
K:258-288
3w
PPTA-1tnbK23
K:258-288
3x
PPTA-1tnbK24
K:258-288
3y
PPTA-1tnbK25
K:258-288
3z
PPTA-1tnbK26
K:258-288
3aa
PPTA-1tnbK27
K:258-288
3ab
PPTA-1tnbK28
K:258-288
3ac
PPTA-1tnbK29
K:258-288
3ad
PPTA-1tnbK30
K:258-288
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