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1TN7
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A TC21 PEPTIDE SUBSTRATE AND A FPP ANALOG AT 2.3A RESOLUTION
Authors
:
T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Date
:
11 Jun 04 (Deposition) - 02 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Ftase, Farnesyltransferase, Farnesyl Transferase, Prenyltransferase, Caax, Tc21, Lipid Modification, Prenylation, Substrate Selectivity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Crystallographic Analysis Of Caax Prenyltransferases Complexed With Substrates Defines Rules Of Protein Substrate Selectivity.
J. Mol. Biol. V. 343 417 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: [(3,7,11-TRIMETHYL-DODECA-2,6,10-T... (FIIa)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
FII
1
Ligand/Ion
[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID
3
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:797 , CYS B:799 , HIS B:862 , CYS C:2006
BINDING SITE FOR RESIDUE ZN B 1001
2
AC2
SOFTWARE
TYR A:166 , HOH A:1550 , HIS B:748 , GLY B:750 , CYS B:754 , ARG B:791 , LYS B:794 , TYR B:800 , TRP B:803 , HOH B:1162 , HOH B:1164 , HOH B:1165 , HOH B:1168 , HOH C:1253 , ILE C:2008
BINDING SITE FOR RESIDUE FII B 1
3
AC3
SOFTWARE
LEU B:589 , THR B:590 , TYR B:593 , HOH B:1183
BINDING SITE FOR RESIDUE ACY B 3002
4
AC4
SOFTWARE
TRP A:169 , HIS A:170 , ARG A:173 , GLN A:204 , HOH A:1115 , HOH A:1171 , HOH A:1243 , GLU B:698
BINDING SITE FOR RESIDUE ACY A 3004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146|A:147-181|A:215-249|A:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_RAT
112-146
147-181
215-249
182-214
255-289
5
A:112-146
A:147-181
A:215-249
A:182-214
A:255-289
[
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Exons
(12, 12)
Info
All Exons
Exon 1.1 (B:517-548)
Exon 1.2 (B:549-570)
Exon 1.3 (B:570-594)
Exon 1.4 (B:595-625)
Exon 1.5 (B:625-674)
Exon 1.6 (B:674-702)
Exon 1.7 (B:702-731)
Exon 1.8 (B:731-774)
Exon 1.9 (B:775-819)
Exon 1.10 (B:819-856)
Exon 1.11 (B:856-894)
Exon 1.12 (B:895-923)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000010588
1
ENSRNOE00000071243
chr6:
99427967-99428155
189
FNTB_RAT
1-48
48
1
B:517-548
32
1.2
ENSRNOT00000010588
2
ENSRNOE00000071421
chr6:
99447593-99447657
65
FNTB_RAT
49-70
22
1
B:549-570
22
1.3
ENSRNOT00000010588
3
ENSRNOE00000071602
chr6:
99457445-99457517
73
FNTB_RAT
70-94
25
1
B:570-594
25
1.4
ENSRNOT00000010588
4
ENSRNOE00000071771
chr6:
99459109-99459200
92
FNTB_RAT
95-125
31
1
B:595-625
31
1.5
ENSRNOT00000010588
5
ENSRNOE00000071976
chr6:
99471356-99471502
147
FNTB_RAT
125-174
50
1
B:625-674
50
1.6
ENSRNOT00000010588
6
ENSRNOE00000072148
chr6:
99471595-99471678
84
FNTB_RAT
174-202
29
1
B:674-702
29
1.7
ENSRNOT00000010588
7
ENSRNOE00000072321
chr6:
99480586-99480672
87
FNTB_RAT
202-231
30
1
B:702-731
30
1.8
ENSRNOT00000010588
8
ENSRNOE00000072507
chr6:
99489459-99489588
130
FNTB_RAT
231-274
44
1
B:731-774
44
1.9
ENSRNOT00000010588
9
ENSRNOE00000072695
chr6:
99492633-99492765
133
FNTB_RAT
275-319
45
1
B:775-819
45
1.10
ENSRNOT00000010588
10
ENSRNOE00000072879
chr6:
99504658-99504769
112
FNTB_RAT
319-356
38
1
B:819-856
38
1.11
ENSRNOT00000010588
11
ENSRNOE00000073070
chr6:
99505820-99505934
115
FNTB_RAT
356-394
39
1
B:856-894
39
1.12
ENSRNOT00000010588
12
ENSRNOE00000238940
chr6:
99510015-99511373
1359
FNTB_RAT
395-437
43
1
B:895-923
29
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1tn7a_ (A:)
2a: SCOP_d1tn7b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(51)
1a
d1tn7a_
A:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(50)
2a
d1tn7b_
B:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1tn7A00 (A:55-377)
2a: CATH_1tn7B00 (B:517-923)
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Norway rat (Rattus norvegicus)
(37)
1a
1tn7A00
A:55-377
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Norway rat (Rattus norvegicus)
(39)
2a
1tn7B00
B:517-923
[
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_Prenyltrans_1tn7B01 (B:830-874)
1b: PFAM_Prenyltrans_1tn7B02 (B:830-874)
2a: PFAM_Prenyltrans_2_1tn7B03 (B:627-741)
3a: PFAM_PPTA_1tn7A01 (A:258-288)
3b: PFAM_PPTA_1tn7A02 (A:258-288)
3c: PFAM_PPTA_1tn7A03 (A:258-288)
3d: PFAM_PPTA_1tn7A04 (A:258-288)
3e: PFAM_PPTA_1tn7A05 (A:258-288)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Prenyltrans
(49)
Rattus norvegicus (Rat)
(31)
1a
Prenyltrans-1tn7B01
B:830-874
1b
Prenyltrans-1tn7B02
B:830-874
Family
:
Prenyltrans_2
(47)
Rattus norvegicus (Rat)
(31)
2a
Prenyltrans_2-1tn7B03
B:627-741
Clan
:
no clan defined [family: PPTA]
(36)
Family
:
PPTA
(36)
Rattus norvegicus (Rat)
(31)
3a
PPTA-1tn7A01
A:258-288
3b
PPTA-1tn7A02
A:258-288
3c
PPTA-1tn7A03
A:258-288
3d
PPTA-1tn7A04
A:258-288
3e
PPTA-1tn7A05
A:258-288
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Chain C
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